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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:69.9 nTPM
HPA:69.9 nTPM
GTEx:79.7 nTPM
FANTOM5:14.4 Scaled Tags Per Million
Pig:3.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 69.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 65.5
2816 Male, age 47, midline 67.0
2194 Female, age 79, both hemispheres 66.4
1981 Female, age 72, midline 65.0
2048 Male, age 55, midline 65.0
2565 Male, age 75, midline 64.1
Cervical spinal cord, dorsal horn
nTPM: 69.9
2721 Male, age 90, both hemispheres 81.4
2296 Male, age 66, both hemispheres 74.5
2069 Male, age 47, both hemispheres 67.4
2173 Female, age 72, unknown 67.2
1877 Male, age 55, unknown 64.8
2297 Male, age 75, both hemispheres 63.8
Cervical spinal cord, ventral horn
nTPM: 66.1
2820 Female, age 79, both hemispheres 69.4
2480 Male, age 75, both hemispheres 67.5
2068 Male, age 55, unknown 67.3
2295 Male, age 66, both hemispheres 65.1
2809 Male, age 90, both hemispheres 63.7
2098 Female, age 72, unknown 63.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 79.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 79.7
Samples: 159

Max nTPM: 195.6
Min nTPM: 1.2
Std nTPM: 42.3
Median nTPM: 74.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 195.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 187.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 186.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 185.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 176.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 171.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 169.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 168.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 157.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 150.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 147.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 146.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 145.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 144.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 141.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 140.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 136.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 136.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 130.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 125.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 124.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 123.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 120.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 118.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 118.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 118.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 118.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 118.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 117.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 116.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 113.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 112.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 112.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 112.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 112.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 110.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 109.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 109.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 108.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 108.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 107.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 105.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 105.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 104.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 104.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 103.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 102.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 101.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 101.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 101.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 101.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 99.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 98.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 97.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 96.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 94.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 92.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 89.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 89.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 88.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 87.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 87.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 86.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 85.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 83.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 83.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 81.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 81.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 80.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 80.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 79.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 79.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 79.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 78.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 77.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 77.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 76.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 76.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 76.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 74.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 73.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 72.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 72.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 72.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 71.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 70.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 70.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 70.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 69.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 69.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 67.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 67.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 67.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 67.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 66.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 64.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 63.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 62.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 62.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 62.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 62.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 61.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 61.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 60.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 59.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 59.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 59.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 59.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 58.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 57.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 57.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 57.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 55.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 55.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 55.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 54.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 53.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 53.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 52.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 49.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 49.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 48.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 48.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 48.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 46.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 46.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 45.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 43.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 41.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 39.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 39.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 39.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 38.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 38.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 33.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 33.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 31.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 30.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 29.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 29.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 27.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 27.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 27.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 26.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 25.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 24.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 23.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 22.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 21.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 21.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 20.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 13.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 10.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 7.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 6.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 5.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 4.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 4.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 14.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 14.4
FF:10181-103D1 60 years, female 19.0
FF:10159-103A6 76 years, female 9.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 3.2
Samples: 4

Max nTPM: 6.2
Min nTPM: 0.4
Sample A Female 6.2
Sample B Female 1.9
Sample C Male 0.4
Sample D Male 4.4
Ventral spinal cord
nTPM: 3.3
Samples: 4

Max nTPM: 4.6
Min nTPM: 1.5
Sample A Female 3.2
Sample B Female 4.6
Sample C Male 4.0
Sample D Male 1.5

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