We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
P4HB
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • P4HB
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: High
Paneth cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:554.7 nTPM
HPA:554.7 nTPM
GTEx:292.0 nTPM
FANTOM5:1180.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA018884Antibody CAB012463
Endocrine cells High-
Enterocytes High-
Enterocytes - Microvilli Not detected-
Glandular cells -High
Goblet cells High-
Paneth cells High-



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 554.7
overview
Male, age 65
Small intestine sample 232
nTPM: 641.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 410.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 560.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 606.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 292.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 292.0
Samples: 187

Max nTPM: 907.9
Min nTPM: 79.3
Std nTPM: 162.4
Median nTPM: 243.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 907.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 830.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 819.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 736.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 665.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 640.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 629.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 595.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 589.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 589.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 573.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 569.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 559.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 549.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 544.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 542.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 538.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 533.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 532.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 522.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 515.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 509.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 495.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 494.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 490.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 474.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 460.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 454.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 451.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 449.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 449.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 448.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 443.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 433.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 430.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 422.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 415.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 412.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 408.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 406.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 403.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 403.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 403.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 402.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 402.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 396.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 394.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 391.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 391.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 390.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 389.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 389.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 387.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 386.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 384.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 380.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 378.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 372.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 372.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 372.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 367.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 359.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 354.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 346.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 343.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 342.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 339.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 335.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 334.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 333.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 330.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 328.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 327.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 326.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 325.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 323.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 319.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 311.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 305.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 280.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 280.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 277.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 277.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 268.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 264.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 263.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 257.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 255.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 254.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 254.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 251.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 248.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 248.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 243.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 242.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 240.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 233.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 221.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 220.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 220.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 219.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 218.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 215.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 215.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 212.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 205.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 205.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 203.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 203.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 201.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 201.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 197.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 196.3
GTEX-1192X-2526-SM-59868 50-59 years, male 194.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 191.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 190.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 187.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 187.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 184.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 183.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 181.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 181.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 180.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 178.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 178.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 177.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 173.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 170.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 170.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 169.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 168.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 167.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 167.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 166.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 161.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 160.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 159.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 159.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 159.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 159.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 158.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 156.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 155.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 152.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 149.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 148.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 147.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 147.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 146.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 145.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 144.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 142.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 142.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 140.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 140.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 140.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 138.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 138.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 138.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 137.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 135.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 134.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 134.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 133.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 133.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 131.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 130.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 129.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 129.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 128.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 128.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 128.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 127.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 127.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 126.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 124.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 120.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 120.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 117.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 116.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 113.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 112.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 110.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 110.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 108.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 104.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 79.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1180.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1180.2
FF:10024-101D6 15,40,85 years, mixed 1180.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.