HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:14.0 nTPM
HPA:14.0 nTPM
GTEx:11.1 nTPM
FANTOM5:29.6 Scaled Tags Per Million
Mouse:3.3 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.0
Sample id Sample description nTPM
Hippocampus
nTPM: 10.9
1911 Female, age 85, right hemisphere 13.2
2529 Female, age 94, left hemisphere 12.8
2621 Female, age 67, right hemisphere 10.1
1855 Male, age 76, left hemisphere 10.0
2148 Female, age 91, left hemisphere 9.7
1898 Male, age 80, left hemisphere 9.5
Dentate gyrus
nTPM: 10.5
2530 Female, age 94, left hemisphere 13.3
2246 Female, age 85, both hemispheres 11.1
2528 Male, age 74, both hemispheres 10.7
2010 Male, age 76, both hemispheres 10.4
1927 Female, age 91, both hemispheres 8.8
2531 Female, age 67, both hemispheres 8.8
Entorhinal gyrus
nTPM: 11.2
2117 Female, age 91, right hemisphere 13.5
2764 Male, age 80, right hemisphere 12.3
2686 Male, age 75, right hemisphere 11.0
1938 Female, age 85, left hemisphere 10.6
2613 Female, age 94, left hemisphere 10.6
1787 Male, age 76, left hemisphere 9.6
Hippocampus, CA1
nTPM: 10.1
2082 Female, age 91, right hemisphere 11.2
1873 Female, age 85, both hemispheres 11.0
2527 Male, age 74, both hemispheres 10.7
2749 Male, age 80, left hemisphere 8.9
2045 Male, age 76, both hemispheres 8.7
Hippocampus, CA2
nTPM: 11.3
2249 Male, age 74, both hemispheres 12.3
1940 Female, age 85, left hemisphere 11.8
2437 Female, age 94, left hemisphere 11.7
1963 Male, age 80, left hemisphere 11.4
2113 Female, age 91, right hemisphere 11.3
1892 Male, age 76, both hemispheres 9.3
Hippocampus, CA3
nTPM: 9.7
1891 Female, age 85, both hemispheres 14.2
1867 Male, age 76, both hemispheres 10.0
2436 Male, age 74, both hemispheres 9.6
2137 Male, age 80, left hemisphere 9.2
2620 Female, age 94, left hemisphere 7.8
2861 Female, age 67, both hemispheres 7.5
Parahippocampal cortex
nTPM: 11.0
2692 Male, age 74, both hemispheres 13.7
2532 Female, age 72, left hemisphere 12.4
1990 Female, age 91, right hemisphere 12.0
1850 Male, age 80, both hemispheres 11.3
2693 Female, age 94, both hemispheres 11.0
2245 Female, age 91, both hemispheres 10.7
1933 Female, age 85, both hemispheres 10.5
2018 Male, age 76, both hemispheres 10.3
2622 Female, age 67, right hemisphere 9.1
2250 Female, age 67, right hemisphere 9.0
Perirhinal gyrus
nTPM: 9.6
2521 Female, age 94, right hemisphere 10.9
2848 Male, age 76, right hemisphere 9.7
1841 Female, age 85, right hemisphere 9.3
1847 Female, age 91, left hemisphere 9.0
1794 Male, age 80, right hemisphere 8.8
Subiculum
nTPM: 14.0
2042 Male, age 76, both hemispheres 16.2
1901 Male, age 80, both hemispheres 15.7
2438 Female, age 94, left hemisphere 15.3
1977 Female, age 85, both hemispheres 14.0
2619 Male, age 74, both hemispheres 12.1
2729 Female, age 91, right hemisphere 10.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.1
Samples: 197

Max nTPM: 34.9
Min nTPM: 1.2
Std nTPM: 7.0
Median nTPM: 8.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 34.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 33.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 33.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 31.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 31.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 31.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 30.1
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 29.6
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 29.3
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 26.1
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 26.0
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 29.6
FF:10153-102I9 76 years, female 33.1
FF:10169-103B7 60 years, female 26.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 3.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 3.3
Samples: 4

Max nTPM: 3.5
Min nTPM: 3.1
Sample A Male 3.5
Sample B Male 3.4
Sample C Female 3.2
Sample D Female 3.1
Hippocampal formation
nTPM: 2.8
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.4
Sample A Male 3.1
Sample B Male 2.4
Sample C Female 2.7
Sample D Female 2.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
71493789 Antisense, RP_050913_02_G01, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.