MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:43.0 nTPM
HPA:43.0 nTPM
GTEx:42.4 nTPM
FANTOM5:36.6 Scaled Tags Per Million
Pig:25.9 nTPM
Mouse:66.6 nTPM
Allen mouse:6.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.2
2586 Male, age 75, left hemisphere 44.9
2019 Male, age 18, unknown 44.7
2411 Female, age 72, unknown 44.6
2828 Female, age 72, unknown 42.3
1870 Female, age 42, unknown 41.1
1830 Male, age 51, unknown 40.9
1833 Male, age 53, unknown 40.7
1827 Male, age 72, unknown 39.7
2219 Male, age 76, both hemispheres 36.9
2666 Male, age 74, left hemisphere 36.1
Dorsal raphe nucleus
nTPM: 43.0
2750 Male, age 76, both hemispheres 47.4
2047 Male, age 72, unknown 44.4
2298 Female, age 72, unknown 43.6
1828 Male, age 53, unknown 41.7
2016 Female, age 72, unknown 38.1
Inferior colliculus
nTPM: 37.0
1848 Female, age 42, unknown 38.1
1890 Male, age 53, unknown 36.7
2097 Female, age 72, unknown 36.6
2849 Male, age 72, unknown 36.6
Median raphe nucleus
nTPM: 39.3
2220 Male, age 76, midline 39.3
Pedunculopontine tegmental nucleus
nTPM: 39.3
1921 Female, age 85, both hemispheres 41.9
2334 Male, age 80, both hemispheres 41.3
2338 Male, age 61, both hemispheres 34.5
Periaquaductal grey, anterior
nTPM: 40.2
2502 Female, age 75, unknown 42.7
1795 Male, age 51, unknown 39.4
1947 Male, age 18, unknown 38.4
Periaquaductal grey, dorsal
nTPM: 35.6
2464 Female, age 72, unknown 37.6
1840 Male, age 53, unknown 36.0
2850 Male, age 76, both hemispheres 35.9
1831 Male, age 72, unknown 32.7
Periaquaductal grey, lateral
nTPM: 37.3
2272 Male, age 74, both hemispheres 39.8
2140 Male, age 76, both hemispheres 36.3
2053 Male, age 18, unknown 35.9
Pretectal area
nTPM: 38.8
2007 Male, age 72, unknown 42.5
2667 Female, age 75, unknown 41.8
1817 Female, age 42, unknown 40.1
2825 Male, age 18, unknown 38.9
1815 Male, age 53, unknown 38.6
2407 Male, age 75, both hemispheres 38.2
2273 Male, age 74, both hemispheres 37.8
1944 Female, age 72, unknown 37.7
2224 Female, age 72, unknown 37.5
1816 Male, age 51, unknown 36.9
2316 Male, age 76, right hemisphere 36.5
Red nucleus
nTPM: 41.1
2785 Male, age 18, unknown 44.6
2227 Male, age 72, unknown 41.7
2769 Male, age 72, unknown 41.6
1821 Female, age 72, unknown 41.4
2725 Female, age 75, unknown 41.4
2588 Male, age 74, left hemisphere 41.2
2823 Male, age 76, right hemisphere 41.2
1865 Male, age 51, unknown 41.1
2503 Female, age 72, unknown 40.4
1904 Male, age 53, unknown 39.9
1954 Female, age 42, unknown 39.6
2584 Male, age 75, left hemisphere 38.7
Substantia nigra
nTPM: 40.6
1916 Female, age 42, unknown 45.5
1851 Male, age 51, unknown 43.3
1941 Male, age 53, unknown 43.1
2241 Male, age 72, unknown 41.7
2409 Female, age 72, unknown 41.0
1889 Female, age 72, unknown 39.6
2665 Male, age 74, both hemispheres 39.1
2699 Male, age 18, unknown 38.6
2583 Male, age 75, right hemisphere 38.1
2590 Female, age 75, unknown 35.5
Superior colliculus
nTPM: 38.4
2664 Male, age 75, both hemispheres 42.0
1796 Male, age 53, unknown 39.8
2587 Male, age 74, left hemisphere 39.6
1839 Male, age 51, unknown 39.2
1895 Male, age 76, right hemisphere 39.1
2668 Female, age 75, unknown 37.9
2261 Male, age 18, unknown 37.1
2087 Female, age 72, unknown 36.8
1995 Male, age 72, unknown 36.7
1913 Female, age 42, unknown 36.0
Ventral tegmental area
nTPM: 40.8
2223 Female, age 72, unknown 43.8
2410 Female, age 72, unknown 43.0
1915 Female, age 42, unknown 41.1
1942 Male, age 51, unknown 39.7
2021 Male, age 53, unknown 38.7
2218 Male, age 76, both hemispheres 38.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.4
Samples: 139

Max nTPM: 67.8
Min nTPM: 18.5
Std nTPM: 10.1
Median nTPM: 41.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 67.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 67.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 66.3
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 62.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 61.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 61.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 60.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 58.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 58.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 57.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 57.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.6
FF:10158-103A5 76 years, female 36.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.9
Pig sample Sample description nTPM
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 39.0
Min nTPM: 18.6
Sample A Female 39.0
Sample B Female 24.4
Sample C Male 21.7
Sample D Male 18.6
Periaqueductal gray
nTPM: 18.0
Samples: 3

Max nTPM: 20.7
Min nTPM: 15.5
Sample B Female 20.7
Sample C Male 17.7
Sample D Male 15.5
Substantia nigra
nTPM: 25.1
Samples: 4

Max nTPM: 33.2
Min nTPM: 18.5
Sample A Female 33.2
Sample B Female 18.5
Sample C Male 23.7
Sample D Male 24.9
Superior colliculi
nTPM: 23.0
Samples: 4

Max nTPM: 28.5
Min nTPM: 18.5
Sample A Female 28.5
Sample B Female 18.5
Sample C Male 22.2
Sample D Male 22.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 66.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 66.6
Samples: 4

Max nTPM: 72.1
Min nTPM: 62.6
Sample A Male 67.6
Sample B Male 62.6
Sample C Female 64.1
Sample D Female 72.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.8
69095961 Antisense, RP_050324_02_E10, Mouse strain C57BL/6J (56 days, male) 13.6
74736360 Antisense, RP_060306_01_C02, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.