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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Mouse brain, Intensity
Ponsi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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122.752
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:195.3 nTPM
HPA:195.3 nTPM
FANTOM5:72.2 Scaled Tags Per Million
Pig:192.8 nTPM
Allen mouse:4.8 Expression energy

PONS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

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, antibody HPA003906
Pons mean intensity 122.752
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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FRONT BACK
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus -
Parabrachial nucleus 37.417
Principle sensory trigeminal nucleus 18.030
Locus coeruleus 122.752
Pontine nucleus 18.078
Vestibular nucleus -
Pontine reticular nucleus, oral 16.783
Lateral lemniscus 10.731
Superior paraolivary nucleus 16.070

PONS - HPA Brain RNA-seq
Max nTPM 195.3
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 166.6
2188 Female, age 91, both hemispheres 169.6
2301 Female, age 85, both hemispheres 168.4
2090 Male, age 80, both hemispheres 166.9
1984 Male, age 76, both hemispheres 161.3
Dorsal cochlear nucleus
nTPM: 175.7
2802 Male, age 74, right hemisphere 181.1
2058 Male, age 76, both hemispheres 179.0
2370 Male, age 61, both hemispheres 177.7
2187 Female, age 91, both hemispheres 170.4
2378 Male, age 80, both hemispheres 170.3
Dorsal tegmental nucleus
nTPM: 173.0
2083 Male, age 80, both hemispheres 179.4
2326 Male, age 74, both hemispheres 173.5
2358 Male, age 61, both hemispheres 171.7
1936 Male, age 76, left hemisphere 167.3
Dorsolateral tegmental area
nTPM: 174.8
2654 Male, age 80, both hemispheres 181.9
2337 Male, age 61, both hemispheres 176.5
2360 Male, age 74, both hemispheres 174.7
2751 Female, age 85, both hemispheres 171.8
2141 Male, age 76, both hemispheres 169.0
Kolliker-Fuse nucleus
nTPM: 176.0
2163 Male, age 80, both hemispheres 187.8
2793 Female, age 91, left hemisphere 172.7
2315 Male, age 76, right hemisphere 167.4
Lateral lemniscal nuclei
nTPM: 182.7
2169 Male, age 76, both hemispheres 194.0
2036 Male, age 80, both hemispheres 190.5
2746 Female, age 85, left hemisphere 183.9
2453 Male, age 74, right hemisphere 177.6
2320 Female, age 91, left hemisphere 167.6
Lateral parabrachial nucleus
nTPM: 178.4
2139 Female, age 85, right hemisphere 191.9
2790 Male, age 61, both hemispheres 177.3
2013 Male, age 80, both hemispheres 175.4
2792 Male, age 76, both hemispheres 169.0
Lateral vestibular nucleus
nTPM: 176.6
2184 Male, age 76, both hemispheres 180.9
2311 Male, age 80, both hemispheres 172.3
Locus coeruleus
nTPM: 195.3
2014 Male, age 55, unknown 210.3
2123 Female, age 91, both hemispheres 209.2
2317 Female, age 72, unknown 199.6
1980 Male, age 76, both hemispheres 195.9
2788 Male, age 74, unknown 185.0
2162 Male, age 80, both hemispheres 183.6
2720 Male, age 74, both hemispheres 183.5
Medial olivary nucleus
nTPM: 170.4
1943 Male, age 61, both hemispheres 177.2
2138 Female, age 91, both hemispheres 168.8
2851 Male, age 80, both hemispheres 168.5
1962 Male, age 76, both hemispheres 167.3
Medial parabrachial nucleus
nTPM: 175.1
2170 Female, age 91, both hemispheres 186.6
2854 Male, age 80, both hemispheres 176.7
2156 Male, age 61, both hemispheres 176.1
2786 Male, age 76, both hemispheres 170.0
2463 Female, age 85, right hemisphere 166.0
Medial periolivary nuclei
nTPM: 186.9
2171 Female, age 85, both hemispheres 210.6
2063 Male, age 76, both hemispheres 204.0
2791 Male, age 74, right hemisphere 179.1
2081 Male, age 80, both hemispheres 172.4
2458 Female, age 91, both hemispheres 168.2
Motor facial nucleus
nTPM: 184.7
2062 Male, age 76, both hemispheres 214.5
2365 Male, age 74, right hemisphere 181.3
2795 Female, age 91, both hemispheres 180.6
2697 Female, age 85, both hemispheres 180.1
2126 Male, age 61, both hemispheres 176.8
2327 Male, age 80, both hemispheres 174.7
Motor trigeminal nucleus
nTPM: 175.2
2079 Male, age 80, both hemispheres 181.5
2560 Male, age 74, both hemispheres 178.6
2309 Male, age 76, both hemispheres 177.5
2335 Male, age 61, both hemispheres 174.7
2321 Female, age 91, both hemispheres 163.8
Nuclei of the trapezoid body
nTPM: 193.1
1983 Male, age 76, both hemispheres 205.9
2735 Female, age 85, both hemispheres 204.8
2159 Male, age 61, both hemispheres 204.1
2166 Male, age 80, both hemispheres 178.0
2368 Female, age 91, both hemispheres 172.8
Paramedian reticular nucleus
nTPM: 188.0
2050 Female, age 85, both hemispheres 203.6
2057 Male, age 80, both hemispheres 191.9
2313 Male, age 61, both hemispheres 190.4
2052 Male, age 76, both hemispheres 166.3
Pontine nuclei
nTPM: 192.7
2727 Male, age 61, right hemisphere 209.6
1863 Male, age 55, unknown 207.5
2787 Female, age 85, both hemispheres 207.4
2109 Female, age 72, unknown 202.4
1968 Male, age 76, left hemisphere 191.9
2115 Male, age 80, left hemisphere 179.2
2454 Male, age 74, left hemisphere 172.6
2319 Female, age 91, both hemispheres 171.1
Pontine raphe nucleus
nTPM: 187.6
2122 Female, age 85, midline 191.0
2853 Male, age 76, midline 184.2
Posteroventral cochlear nucleus
nTPM: 175.3
2752 Female, age 85, both hemispheres 186.4
2371 Male, age 61, both hemispheres 180.4
2070 Male, age 76, both hemispheres 175.6
2135 Female, age 91, both hemispheres 171.4
2341 Male, age 80, both hemispheres 162.7
Principal sensory trigeminal nucleus
nTPM: 185.1
2158 Male, age 61, both hemispheres 208.2
2008 Male, age 80, left hemisphere 188.4
2324 Male, age 76, both hemispheres 176.4
2367 Female, age 91, left hemisphere 167.4
Reticular pontine nucleus, caudal
nTPM: 177.2
2092 Male, age 76, both hemispheres 187.5
2332 Male, age 80, right hemisphere 180.0
2559 Male, age 74, both hemispheres 176.1
2457 Female, age 91, both hemispheres 165.2
Reticular pontine nucleus, oral
nTPM: 174.6
2012 Female, age 85, both hemispheres 185.7
1939 Male, age 80, both hemispheres 177.7
2361 Male, age 74, both hemispheres 172.9
2167 Male, age 76, both hemispheres 169.7
2366 Female, age 91, both hemispheres 166.7
Reticulotegmental nucleus
nTPM: 179.2
2325 Male, age 76, both hemispheres 189.7
2452 Male, age 74, both hemispheres 177.9
2333 Male, age 80, both hemispheres 176.5
2322 Female, age 91, both hemispheres 172.7
Spinal trigeminal nucleus, oral
nTPM: 173.7
2164 Male, age 80, both hemispheres 179.4
2737 Female, age 85, both hemispheres 176.4
1978 Male, age 76, both hemispheres 165.2
Subcoeruleus area
nTPM: 176.8
2323 Female, age 91, left hemisphere 185.2
1958 Male, age 80, both hemispheres 180.7
2089 Male, age 76, left hemisphere 175.7
2451 Male, age 74, both hemispheres 174.5
2369 Female, age 85, left hemisphere 168.0
Superior olive
nTPM: 179.9
1875 Female, age 85, both hemispheres 191.4
2020 Male, age 76, both hemispheres 183.7
2364 Male, age 74, right hemisphere 175.7
2561 Female, age 91, both hemispheres 175.6
2329 Male, age 80, right hemisphere 172.9
Superior vestibular nucleus
nTPM: 174.6
2015 Male, age 80, both hemispheres 180.4
2383 Male, age 74, both hemispheres 173.5
2061 Male, age 76, both hemispheres 169.7
Ventral periolivary nuclei
nTPM: 188.6
2130 Female, age 85, both hemispheres 197.4
2165 Male, age 80, both hemispheres 191.8
2023 Male, age 76, both hemispheres 183.3
2794 Female, age 91, left hemisphere 181.7
Ventrolateral tegmental area, A5 NE cell group
nTPM: 176.5
1959 Male, age 76, both hemispheres 180.6
2449 Male, age 74, both hemispheres 178.8
2840 Female, age 85, both hemispheres 178.7
2161 Male, age 80, both hemispheres 178.2
2359 Male, age 61, both hemispheres 174.6
2456 Female, age 91, both hemispheres 168.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 72.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 39.3
FF:10165-103B3 76 years, female 50.3
FF:10182-103D2 60 years, female 28.2
Pons
Scaled Tags Per Million: 72.2
FF:10033-101E6 18-54 years, mixed 72.2

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 192.8
Pig sample Sample description nTPM
Pons
nTPM: 192.8
Samples: 4

Max nTPM: 212.4
Min nTPM: 157.0
Sample A Female 193.5
Sample B Female 157.0
Sample C Male 212.4
Sample D Male 208.4

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 4.8
79544798 Antisense, RP_071018_01_C08, Mouse strain C57BL/6J (56 days, male) 4.8

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.