MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:187.5 nTPM
HPA:187.5 nTPM
GTEx:161.1 nTPM
FANTOM5:40.3 Scaled Tags Per Million
Pig:186.9 nTPM
Mouse:158.1 nTPM
Allen mouse:4.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 187.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 176.9
2666 Male, age 74, left hemisphere 203.0
1827 Male, age 72, unknown 182.3
2411 Female, age 72, unknown 182.1
2019 Male, age 18, unknown 178.5
2828 Female, age 72, unknown 174.3
1833 Male, age 53, unknown 173.4
2586 Male, age 75, left hemisphere 171.3
1870 Female, age 42, unknown 170.8
1830 Male, age 51, unknown 168.8
2219 Male, age 76, both hemispheres 164.4
Dorsal raphe nucleus
nTPM: 182.8
2298 Female, age 72, unknown 196.3
2047 Male, age 72, unknown 188.4
2750 Male, age 76, both hemispheres 179.9
1828 Male, age 53, unknown 179.0
2016 Female, age 72, unknown 170.1
Inferior colliculus
nTPM: 165.0
1848 Female, age 42, unknown 167.3
2849 Male, age 72, unknown 166.9
2097 Female, age 72, unknown 165.4
1890 Male, age 53, unknown 160.5
Median raphe nucleus
nTPM: 187.5
2220 Male, age 76, midline 187.5
Pedunculopontine tegmental nucleus
nTPM: 176.7
2334 Male, age 80, both hemispheres 186.6
2338 Male, age 61, both hemispheres 173.4
1921 Female, age 85, both hemispheres 170.0
Periaquaductal grey, anterior
nTPM: 173.1
1795 Male, age 51, unknown 180.2
1947 Male, age 18, unknown 174.9
2502 Female, age 75, unknown 164.2
Periaquaductal grey, dorsal
nTPM: 166.0
1840 Male, age 53, unknown 167.6
2850 Male, age 76, both hemispheres 166.5
2464 Female, age 72, unknown 165.1
1831 Male, age 72, unknown 164.9
Periaquaductal grey, lateral
nTPM: 164.4
2272 Male, age 74, both hemispheres 169.2
2053 Male, age 18, unknown 165.0
2140 Male, age 76, both hemispheres 159.1
Pretectal area
nTPM: 175.8
2007 Male, age 72, unknown 190.6
1817 Female, age 42, unknown 190.3
1816 Male, age 51, unknown 184.4
1815 Male, age 53, unknown 183.1
1944 Female, age 72, unknown 182.3
2224 Female, age 72, unknown 173.4
2667 Female, age 75, unknown 170.0
2825 Male, age 18, unknown 169.7
2273 Male, age 74, both hemispheres 166.7
2407 Male, age 75, both hemispheres 165.9
2316 Male, age 76, right hemisphere 157.0
Red nucleus
nTPM: 167.3
1821 Female, age 72, unknown 180.3
2725 Female, age 75, unknown 174.4
2785 Male, age 18, unknown 170.9
2588 Male, age 74, left hemisphere 168.6
2584 Male, age 75, left hemisphere 168.4
2503 Female, age 72, unknown 167.9
1954 Female, age 42, unknown 166.8
2769 Male, age 72, unknown 164.1
2227 Male, age 72, unknown 163.7
2823 Male, age 76, right hemisphere 161.9
1904 Male, age 53, unknown 161.3
1865 Male, age 51, unknown 159.4
Substantia nigra
nTPM: 186.0
1916 Female, age 42, unknown 207.3
1941 Male, age 53, unknown 198.7
1851 Male, age 51, unknown 197.4
1889 Female, age 72, unknown 186.5
2665 Male, age 74, both hemispheres 186.3
2241 Male, age 72, unknown 181.3
2699 Male, age 18, unknown 180.0
2409 Female, age 72, unknown 175.1
2590 Female, age 75, unknown 174.4
2583 Male, age 75, right hemisphere 172.9
Superior colliculus
nTPM: 169.8
2668 Female, age 75, unknown 186.4
2087 Female, age 72, unknown 177.7
1796 Male, age 53, unknown 175.2
2587 Male, age 74, left hemisphere 173.0
2261 Male, age 18, unknown 169.3
1839 Male, age 51, unknown 168.3
1895 Male, age 76, right hemisphere 164.7
2664 Male, age 75, both hemispheres 163.7
1913 Female, age 42, unknown 162.3
1995 Male, age 72, unknown 157.1
Ventral tegmental area
nTPM: 178.8
1915 Female, age 42, unknown 191.8
2410 Female, age 72, unknown 191.5
2218 Male, age 76, both hemispheres 178.9
1942 Male, age 51, unknown 170.6
2223 Female, age 72, unknown 170.2
2021 Male, age 53, unknown 170.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 161.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 161.1
Samples: 139

Max nTPM: 321.9
Min nTPM: 96.8
Std nTPM: 37.8
Median nTPM: 153.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 321.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 261.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 244.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 243.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 238.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 237.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 237.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 226.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 224.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 222.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 220.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.3
FF:10158-103A5 76 years, female 40.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 186.9
Pig sample Sample description nTPM
Midbrain
nTPM: 174.1
Samples: 4

Max nTPM: 228.5
Min nTPM: 146.6
Sample A Female 228.5
Sample B Female 159.7
Sample C Male 161.6
Sample D Male 146.6
Periaqueductal gray
nTPM: 145.5
Samples: 3

Max nTPM: 161.3
Min nTPM: 133.1
Sample B Female 142.2
Sample C Male 161.3
Sample D Male 133.1
Substantia nigra
nTPM: 169.3
Samples: 4

Max nTPM: 220.4
Min nTPM: 139.6
Sample A Female 220.4
Sample B Female 149.3
Sample C Male 168.0
Sample D Male 139.6
Superior colliculi
nTPM: 186.9
Samples: 4

Max nTPM: 225.4
Min nTPM: 164.5
Sample A Female 225.4
Sample B Female 186.0
Sample C Male 171.7
Sample D Male 164.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 158.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 158.2
Samples: 4

Max nTPM: 165.1
Min nTPM: 153.4
Sample A Male 155.2
Sample B Male 153.4
Sample C Female 158.9
Sample D Female 165.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.9
79544798 Antisense, RP_071018_01_C08, Mouse strain C57BL/6J (56 days, male) 4.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.