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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:252.4 nTPM
HPA:154.6 nTPM
GTEx:252.4 nTPM
FANTOM5:240.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA004810Antibody CAB017615
Glandular cells Not detectedNot detected




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 154.6
overview
Male, age 65
Small intestine sample 232
nTPM: 122.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 162.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 151.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 181.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 252.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 252.4
Samples: 187

Max nTPM: 759.4
Min nTPM: 86.6
Std nTPM: 116.1
Median nTPM: 219.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 759.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 700.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 625.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 570.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 546.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 516.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 509.8
GTEX-1192X-2526-SM-59868 50-59 years, male 509.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 488.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 474.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 460.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 459.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 457.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 442.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 440.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 437.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 431.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 425.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 419.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 402.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 399.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 397.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 396.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 392.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 391.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 389.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 374.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 370.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 364.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 363.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 362.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 360.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 360.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 359.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 339.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 335.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 334.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 324.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 321.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 321.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 317.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 317.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 316.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 313.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 303.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 299.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 294.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 291.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 290.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 290.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 289.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 289.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 287.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 287.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 283.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 281.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 280.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 277.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 276.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 274.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 274.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 272.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 271.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 269.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 268.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 268.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 268.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 266.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 265.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 263.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 262.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 262.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 261.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 259.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 258.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 257.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 256.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 252.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 251.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 250.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 249.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 248.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 240.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 238.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 233.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 233.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 231.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 230.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 223.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 223.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 221.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 221.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 220.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 219.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 219.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 219.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 218.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 216.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 215.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 213.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 213.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 213.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 212.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 211.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 210.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 209.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 209.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 208.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 206.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 205.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 203.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 200.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 200.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 198.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 198.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 196.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 196.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 195.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 191.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 190.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 190.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 190.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 189.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 187.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 187.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 185.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 182.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 180.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 180.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 176.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 173.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 172.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 171.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 171.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 171.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 171.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 170.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 169.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 169.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 165.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 161.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 161.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 160.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 160.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 160.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 159.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 159.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 157.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 155.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 152.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 151.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 151.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 150.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 150.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 149.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 148.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 148.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 148.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 148.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 145.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 144.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 143.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 142.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 142.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 142.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 141.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 141.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 140.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 139.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 138.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 138.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 137.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 134.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 133.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 133.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 133.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 133.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 129.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 129.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 125.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 123.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 113.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 111.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 102.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 101.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 99.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 86.6
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 240.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 240.4
FF:10024-101D6 15,40,85 years, mixed 240.4

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