MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:106.5 nTPM
HPA:106.5 nTPM
GTEx:97.7 nTPM
FANTOM5:567.1 Scaled Tags Per Million
Pig:162.5 nTPM
Mouse:483.3 nTPM
Allen mouse:14.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 106.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 93.9
1870 Female, age 42, unknown 110.4
2019 Male, age 18, unknown 109.5
2411 Female, age 72, unknown 104.0
1830 Male, age 51, unknown 103.4
1833 Male, age 53, unknown 101.7
2828 Female, age 72, unknown 98.2
1827 Male, age 72, unknown 81.2
2666 Male, age 74, left hemisphere 78.9
2219 Male, age 76, both hemispheres 76.4
2586 Male, age 75, left hemisphere 75.7
Dorsal raphe nucleus
nTPM: 90.2
2750 Male, age 76, both hemispheres 112.0
2016 Female, age 72, unknown 87.9
1828 Male, age 53, unknown 85.8
2298 Female, age 72, unknown 85.8
2047 Male, age 72, unknown 79.7
Inferior colliculus
nTPM: 78.3
1848 Female, age 42, unknown 81.8
2097 Female, age 72, unknown 79.0
1890 Male, age 53, unknown 77.7
2849 Male, age 72, unknown 74.8
Median raphe nucleus
nTPM: 78.0
2220 Male, age 76, midline 78.0
Pedunculopontine tegmental nucleus
nTPM: 89.4
2334 Male, age 80, both hemispheres 95.3
2338 Male, age 61, both hemispheres 93.0
1921 Female, age 85, both hemispheres 79.8
Periaquaductal grey, anterior
nTPM: 85.8
2502 Female, age 75, unknown 88.9
1947 Male, age 18, unknown 87.7
1795 Male, age 51, unknown 81.0
Periaquaductal grey, dorsal
nTPM: 75.8
2464 Female, age 72, unknown 80.9
2850 Male, age 76, both hemispheres 79.9
1831 Male, age 72, unknown 74.9
1840 Male, age 53, unknown 67.4
Periaquaductal grey, lateral
nTPM: 85.2
2272 Male, age 74, both hemispheres 98.0
2053 Male, age 18, unknown 80.8
2140 Male, age 76, both hemispheres 76.7
Pretectal area
nTPM: 87.2
2273 Male, age 74, both hemispheres 100.5
1815 Male, age 53, unknown 94.1
1817 Female, age 42, unknown 91.5
2667 Female, age 75, unknown 90.9
2316 Male, age 76, right hemisphere 90.1
2007 Male, age 72, unknown 89.5
2407 Male, age 75, both hemispheres 88.2
2224 Female, age 72, unknown 81.8
2825 Male, age 18, unknown 78.7
1944 Female, age 72, unknown 78.4
1816 Male, age 51, unknown 74.9
Red nucleus
nTPM: 106.5
1904 Male, age 53, unknown 121.3
1865 Male, age 51, unknown 119.1
1821 Female, age 72, unknown 115.8
2785 Male, age 18, unknown 115.8
2769 Male, age 72, unknown 114.7
2227 Male, age 72, unknown 113.5
1954 Female, age 42, unknown 110.0
2823 Male, age 76, right hemisphere 107.2
2503 Female, age 72, unknown 104.5
2725 Female, age 75, unknown 89.4
2584 Male, age 75, left hemisphere 84.4
2588 Male, age 74, left hemisphere 82.1
Substantia nigra
nTPM: 85.7
2590 Female, age 75, unknown 95.8
2409 Female, age 72, unknown 93.8
1851 Male, age 51, unknown 93.5
1889 Female, age 72, unknown 87.6
1916 Female, age 42, unknown 86.6
2583 Male, age 75, right hemisphere 84.8
1941 Male, age 53, unknown 81.4
2699 Male, age 18, unknown 80.9
2241 Male, age 72, unknown 80.4
2665 Male, age 74, both hemispheres 72.5
Superior colliculus
nTPM: 89.3
1995 Male, age 72, unknown 106.9
1913 Female, age 42, unknown 105.5
2587 Male, age 74, left hemisphere 101.1
1895 Male, age 76, right hemisphere 91.6
1839 Male, age 51, unknown 87.5
2668 Female, age 75, unknown 84.9
1796 Male, age 53, unknown 84.5
2261 Male, age 18, unknown 82.4
2087 Female, age 72, unknown 75.6
2664 Male, age 75, both hemispheres 72.5
Ventral tegmental area
nTPM: 90.7
2410 Female, age 72, unknown 104.7
2223 Female, age 72, unknown 100.8
2021 Male, age 53, unknown 86.8
1915 Female, age 42, unknown 86.7
2218 Male, age 76, both hemispheres 82.8
1942 Male, age 51, unknown 82.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 97.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.7
Samples: 139

Max nTPM: 246.8
Min nTPM: 61.7
Std nTPM: 27.8
Median nTPM: 91.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 246.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 203.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 185.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 174.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 163.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 163.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 161.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 149.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 149.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 148.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 146.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 567.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 567.1
FF:10158-103A5 76 years, female 567.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 162.5
Pig sample Sample description nTPM
Midbrain
nTPM: 162.5
Samples: 4

Max nTPM: 272.1
Min nTPM: 109.0
Sample A Female 272.1
Sample B Female 143.9
Sample C Male 125.1
Sample D Male 109.0
Periaqueductal gray
nTPM: 124.6
Samples: 3

Max nTPM: 133.0
Min nTPM: 119.5
Sample B Female 133.0
Sample C Male 121.4
Sample D Male 119.5
Substantia nigra
nTPM: 155.5
Samples: 4

Max nTPM: 193.3
Min nTPM: 122.5
Sample A Female 169.6
Sample B Female 122.5
Sample C Male 136.7
Sample D Male 193.3
Superior colliculi
nTPM: 151.6
Samples: 4

Max nTPM: 177.5
Min nTPM: 128.5
Sample A Female 177.5
Sample B Female 128.5
Sample C Male 142.7
Sample D Male 157.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 483.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 483.3
Samples: 4

Max nTPM: 497.6
Min nTPM: 464.4
Sample A Male 479.1
Sample B Male 464.4
Sample C Female 492.0
Sample D Female 497.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.4
69736022 Antisense, RP_050503_04_A07, Mouse strain C57BL/6J (56 days, male) 14.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.