MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:585.1 nTPM
HPA:585.1 nTPM
GTEx:253.2 nTPM
FANTOM5:174.4 Scaled Tags Per Million
Pig:72.3 nTPM
Mouse:106.3 nTPM
Allen mouse:14.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 585.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 572.5
2411 Female, age 72, unknown 589.5
1827 Male, age 72, unknown 583.7
2666 Male, age 74, left hemisphere 583.0
2586 Male, age 75, left hemisphere 574.9
2019 Male, age 18, unknown 571.5
1870 Female, age 42, unknown 570.5
2828 Female, age 72, unknown 568.7
1833 Male, age 53, unknown 567.1
2219 Male, age 76, both hemispheres 561.6
1830 Male, age 51, unknown 554.7
Dorsal raphe nucleus
nTPM: 574.1
2298 Female, age 72, unknown 597.7
1828 Male, age 53, unknown 576.0
2750 Male, age 76, both hemispheres 572.3
2047 Male, age 72, unknown 566.5
2016 Female, age 72, unknown 558.2
Inferior colliculus
nTPM: 574.6
2097 Female, age 72, unknown 588.8
1890 Male, age 53, unknown 576.0
1848 Female, age 42, unknown 569.3
2849 Male, age 72, unknown 564.4
Median raphe nucleus
nTPM: 568.2
2220 Male, age 76, midline 568.2
Pedunculopontine tegmental nucleus
nTPM: 579.2
2334 Male, age 80, both hemispheres 585.8
1921 Female, age 85, both hemispheres 579.1
2338 Male, age 61, both hemispheres 572.9
Periaquaductal grey, anterior
nTPM: 585.1
1795 Male, age 51, unknown 592.9
1947 Male, age 18, unknown 590.3
2502 Female, age 75, unknown 572.2
Periaquaductal grey, dorsal
nTPM: 561.4
1840 Male, age 53, unknown 571.2
2464 Female, age 72, unknown 564.6
1831 Male, age 72, unknown 557.3
2850 Male, age 76, both hemispheres 552.3
Periaquaductal grey, lateral
nTPM: 564.5
2272 Male, age 74, both hemispheres 578.4
2053 Male, age 18, unknown 560.7
2140 Male, age 76, both hemispheres 554.3
Pretectal area
nTPM: 580.8
2007 Male, age 72, unknown 606.6
1817 Female, age 42, unknown 603.1
1944 Female, age 72, unknown 599.2
1816 Male, age 51, unknown 593.8
2667 Female, age 75, unknown 580.3
2224 Female, age 72, unknown 579.6
1815 Male, age 53, unknown 579.3
2273 Male, age 74, both hemispheres 576.6
2825 Male, age 18, unknown 570.1
2316 Male, age 76, right hemisphere 557.3
2407 Male, age 75, both hemispheres 543.4
Red nucleus
nTPM: 584.3
2503 Female, age 72, unknown 606.5
1821 Female, age 72, unknown 603.2
2227 Male, age 72, unknown 594.8
2725 Female, age 75, unknown 593.7
2769 Male, age 72, unknown 591.6
2785 Male, age 18, unknown 583.6
1904 Male, age 53, unknown 579.4
1865 Male, age 51, unknown 578.7
1954 Female, age 42, unknown 578.3
2588 Male, age 74, left hemisphere 576.9
2823 Male, age 76, right hemisphere 568.4
2584 Male, age 75, left hemisphere 557.0
Substantia nigra
nTPM: 584.5
1916 Female, age 42, unknown 622.1
1851 Male, age 51, unknown 610.5
1889 Female, age 72, unknown 593.1
1941 Male, age 53, unknown 580.9
2665 Male, age 74, both hemispheres 580.8
2699 Male, age 18, unknown 579.9
2409 Female, age 72, unknown 579.3
2590 Female, age 75, unknown 570.4
2241 Male, age 72, unknown 567.2
2583 Male, age 75, right hemisphere 561.0
Superior colliculus
nTPM: 571.4
1796 Male, age 53, unknown 595.0
2668 Female, age 75, unknown 585.8
2087 Female, age 72, unknown 584.0
2261 Male, age 18, unknown 582.4
2587 Male, age 74, left hemisphere 571.2
1913 Female, age 42, unknown 566.5
1895 Male, age 76, right hemisphere 560.8
1995 Male, age 72, unknown 557.8
1839 Male, age 51, unknown 556.3
2664 Male, age 75, both hemispheres 553.9
Ventral tegmental area
nTPM: 584.1
2410 Female, age 72, unknown 606.0
1915 Female, age 42, unknown 598.6
2218 Male, age 76, both hemispheres 583.7
2223 Female, age 72, unknown 579.5
1942 Male, age 51, unknown 579.3
2021 Male, age 53, unknown 557.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 253.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 253.2
Samples: 139

Max nTPM: 604.4
Min nTPM: 107.0
Std nTPM: 76.0
Median nTPM: 240.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 604.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 552.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 463.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 440.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 439.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 406.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 401.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 392.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 390.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 389.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 382.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 174.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 174.4
FF:10158-103A5 76 years, female 174.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 72.3
Pig sample Sample description nTPM
Midbrain
nTPM: 64.7
Samples: 4

Max nTPM: 73.8
Min nTPM: 57.0
Sample A Female 73.8
Sample B Female 61.1
Sample C Male 67.0
Sample D Male 57.0
Periaqueductal gray
nTPM: 53.4
Samples: 3

Max nTPM: 56.7
Min nTPM: 48.6
Sample B Female 56.7
Sample C Male 54.9
Sample D Male 48.6
Substantia nigra
nTPM: 57.7
Samples: 4

Max nTPM: 82.6
Min nTPM: 42.8
Sample A Female 82.6
Sample B Female 48.0
Sample C Male 57.2
Sample D Male 42.8
Superior colliculi
nTPM: 72.4
Samples: 4

Max nTPM: 88.0
Min nTPM: 60.0
Sample A Female 88.0
Sample B Female 70.5
Sample C Male 70.9
Sample D Male 60.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 106.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 106.3
Samples: 4

Max nTPM: 132.1
Min nTPM: 90.3
Sample A Male 132.1
Sample B Male 93.7
Sample C Female 90.3
Sample D Female 108.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.2
69838573 Antisense, RP_050310_01_F12, Mouse strain C57BL/6J (56 days, male) 14.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.