MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:22.5 nTPM
HPA:22.5 nTPM
GTEx:18.4 nTPM
FANTOM5:12.0 Scaled Tags Per Million
Pig:14.4 nTPM
Mouse:45.8 nTPM
Allen mouse:8.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.9
2666 Male, age 74, left hemisphere 20.3
1827 Male, age 72, unknown 18.7
2586 Male, age 75, left hemisphere 17.1
2019 Male, age 18, unknown 16.0
2411 Female, age 72, unknown 15.8
1833 Male, age 53, unknown 15.6
2219 Male, age 76, both hemispheres 14.7
2828 Female, age 72, unknown 14.6
1870 Female, age 42, unknown 13.1
1830 Male, age 51, unknown 12.9
Dorsal raphe nucleus
nTPM: 13.9
2298 Female, age 72, unknown 15.8
2750 Male, age 76, both hemispheres 14.9
2047 Male, age 72, unknown 14.7
1828 Male, age 53, unknown 12.7
2016 Female, age 72, unknown 11.3
Inferior colliculus
nTPM: 13.8
2849 Male, age 72, unknown 15.6
2097 Female, age 72, unknown 13.8
1848 Female, age 42, unknown 12.9
1890 Male, age 53, unknown 12.7
Median raphe nucleus
nTPM: 22.5
2220 Male, age 76, midline 22.5
Pedunculopontine tegmental nucleus
nTPM: 14.4
2334 Male, age 80, both hemispheres 17.3
1921 Female, age 85, both hemispheres 14.2
2338 Male, age 61, both hemispheres 11.8
Periaquaductal grey, anterior
nTPM: 14.7
1795 Male, age 51, unknown 15.9
1947 Male, age 18, unknown 14.9
2502 Female, age 75, unknown 13.4
Periaquaductal grey, dorsal
nTPM: 13.9
1840 Male, age 53, unknown 14.7
1831 Male, age 72, unknown 14.4
2464 Female, age 72, unknown 14.0
2850 Male, age 76, both hemispheres 12.4
Periaquaductal grey, lateral
nTPM: 13.0
2272 Male, age 74, both hemispheres 14.2
2053 Male, age 18, unknown 12.9
2140 Male, age 76, both hemispheres 11.9
Pretectal area
nTPM: 15.7
1816 Male, age 51, unknown 19.9
1817 Female, age 42, unknown 18.3
1815 Male, age 53, unknown 16.8
2007 Male, age 72, unknown 16.8
2825 Male, age 18, unknown 16.7
1944 Female, age 72, unknown 16.6
2224 Female, age 72, unknown 15.3
2407 Male, age 75, both hemispheres 15.3
2667 Female, age 75, unknown 14.0
2316 Male, age 76, right hemisphere 12.5
2273 Male, age 74, both hemispheres 10.2
Red nucleus
nTPM: 13.1
2584 Male, age 75, left hemisphere 19.1
2588 Male, age 74, left hemisphere 15.9
2823 Male, age 76, right hemisphere 14.6
2725 Female, age 75, unknown 14.3
2785 Male, age 18, unknown 13.4
1954 Female, age 42, unknown 13.1
2503 Female, age 72, unknown 11.9
2769 Male, age 72, unknown 11.9
1821 Female, age 72, unknown 11.8
1904 Male, age 53, unknown 10.8
1865 Male, age 51, unknown 10.5
2227 Male, age 72, unknown 10.4
Substantia nigra
nTPM: 15.4
2665 Male, age 74, both hemispheres 19.8
1941 Male, age 53, unknown 18.0
1916 Female, age 42, unknown 17.6
2583 Male, age 75, right hemisphere 15.9
1851 Male, age 51, unknown 15.6
1889 Female, age 72, unknown 14.5
2699 Male, age 18, unknown 13.7
2590 Female, age 75, unknown 13.4
2241 Male, age 72, unknown 12.7
2409 Female, age 72, unknown 12.4
Superior colliculus
nTPM: 15.1
2664 Male, age 75, both hemispheres 19.7
2668 Female, age 75, unknown 18.5
2087 Female, age 72, unknown 17.5
1796 Male, age 53, unknown 16.2
1839 Male, age 51, unknown 15.8
1995 Male, age 72, unknown 14.8
2261 Male, age 18, unknown 14.6
1895 Male, age 76, right hemisphere 12.1
2587 Male, age 74, left hemisphere 11.4
1913 Female, age 42, unknown 10.9
Ventral tegmental area
nTPM: 16.1
2218 Male, age 76, both hemispheres 19.0
2223 Female, age 72, unknown 18.1
1942 Male, age 51, unknown 15.8
2410 Female, age 72, unknown 15.3
2021 Male, age 53, unknown 15.2
1915 Female, age 42, unknown 13.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.4
Samples: 139

Max nTPM: 33.9
Min nTPM: 8.4
Std nTPM: 5.2
Median nTPM: 18.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 33.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 31.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 31.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 31.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 27.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 27.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 27.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 26.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 26.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 26.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 26.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.0
FF:10158-103A5 76 years, female 12.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.4
Pig sample Sample description nTPM
Midbrain
nTPM: 13.9
Samples: 4

Max nTPM: 17.8
Min nTPM: 12.0
Sample A Female 12.0
Sample B Female 12.2
Sample C Male 13.4
Sample D Male 17.8
Periaqueductal gray
nTPM: 14.3
Samples: 3

Max nTPM: 15.5
Min nTPM: 12.6
Sample B Female 12.6
Sample C Male 15.5
Sample D Male 14.7
Substantia nigra
nTPM: 13.0
Samples: 4

Max nTPM: 18.2
Min nTPM: 7.6
Sample A Female 18.2
Sample B Female 11.6
Sample C Male 14.7
Sample D Male 7.6
Superior colliculi
nTPM: 14.4
Samples: 4

Max nTPM: 18.8
Min nTPM: 12.7
Sample A Female 18.8
Sample B Female 13.0
Sample C Male 13.1
Sample D Male 12.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 45.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.9
Samples: 4

Max nTPM: 47.1
Min nTPM: 43.6
Sample A Male 47.1
Sample B Male 43.6
Sample C Female 45.8
Sample D Female 46.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.5
74581382 Antisense, RP_051214_01_C07, Mouse strain C57BL/6J (56 days, male) 8.5
75692716 Antisense, RP_051214_01_C07, Mouse strain C57BL/6J (56 days, male) 6.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.