MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:11.8 nTPM
HPA:11.8 nTPM
GTEx:10.8 nTPM
FANTOM5:7.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.0
2586 Male, age 75, left hemisphere 10.4
2828 Female, age 72, unknown 9.6
2219 Male, age 76, both hemispheres 9.5
1830 Male, age 51, unknown 9.4
1833 Male, age 53, unknown 9.4
2666 Male, age 74, left hemisphere 9.3
1827 Male, age 72, unknown 9.1
2411 Female, age 72, unknown 8.9
1870 Female, age 42, unknown 8.0
2019 Male, age 18, unknown 6.3
Dorsal raphe nucleus
nTPM: 10.7
2047 Male, age 72, unknown 13.6
2298 Female, age 72, unknown 10.7
2016 Female, age 72, unknown 10.1
1828 Male, age 53, unknown 9.7
2750 Male, age 76, both hemispheres 9.1
Inferior colliculus
nTPM: 11.8
1848 Female, age 42, unknown 12.6
2849 Male, age 72, unknown 12.0
1890 Male, age 53, unknown 11.5
2097 Female, age 72, unknown 11.2
Median raphe nucleus
nTPM: 9.2
2220 Male, age 76, midline 9.2
Pedunculopontine tegmental nucleus
nTPM: 8.6
1921 Female, age 85, both hemispheres 9.9
2334 Male, age 80, both hemispheres 8.2
2338 Male, age 61, both hemispheres 7.7
Periaquaductal grey, anterior
nTPM: 10.0
1947 Male, age 18, unknown 12.0
2502 Female, age 75, unknown 9.3
1795 Male, age 51, unknown 8.8
Periaquaductal grey, dorsal
nTPM: 11.4
1840 Male, age 53, unknown 14.3
2464 Female, age 72, unknown 11.7
2850 Male, age 76, both hemispheres 10.0
1831 Male, age 72, unknown 9.6
Periaquaductal grey, lateral
nTPM: 9.3
2053 Male, age 18, unknown 10.5
2140 Male, age 76, both hemispheres 9.2
2272 Male, age 74, both hemispheres 8.1
Pretectal area
nTPM: 8.9
2825 Male, age 18, unknown 11.6
1816 Male, age 51, unknown 9.8
2224 Female, age 72, unknown 9.5
1817 Female, age 42, unknown 8.9
1944 Female, age 72, unknown 8.9
2407 Male, age 75, both hemispheres 8.7
2667 Female, age 75, unknown 8.5
1815 Male, age 53, unknown 8.2
2316 Male, age 76, right hemisphere 8.2
2273 Male, age 74, both hemispheres 8.1
2007 Male, age 72, unknown 8.0
Red nucleus
nTPM: 9.0
1954 Female, age 42, unknown 10.5
2588 Male, age 74, left hemisphere 10.5
1821 Female, age 72, unknown 10.1
2503 Female, age 72, unknown 9.5
1904 Male, age 53, unknown 9.1
2725 Female, age 75, unknown 9.1
2769 Male, age 72, unknown 9.0
2227 Male, age 72, unknown 8.5
2584 Male, age 75, left hemisphere 8.5
2823 Male, age 76, right hemisphere 8.4
1865 Male, age 51, unknown 8.1
2785 Male, age 18, unknown 6.0
Substantia nigra
nTPM: 9.7
2241 Male, age 72, unknown 11.2
2699 Male, age 18, unknown 11.2
1916 Female, age 42, unknown 11.0
1851 Male, age 51, unknown 9.5
1889 Female, age 72, unknown 9.4
1941 Male, age 53, unknown 9.4
2665 Male, age 74, both hemispheres 9.3
2583 Male, age 75, right hemisphere 9.1
2590 Female, age 75, unknown 8.8
2409 Female, age 72, unknown 7.9
Superior colliculus
nTPM: 9.1
2668 Female, age 75, unknown 10.6
1895 Male, age 76, right hemisphere 10.3
2261 Male, age 18, unknown 9.6
2664 Male, age 75, both hemispheres 9.6
1839 Male, age 51, unknown 9.3
2087 Female, age 72, unknown 9.3
2587 Male, age 74, left hemisphere 9.1
1796 Male, age 53, unknown 8.1
1995 Male, age 72, unknown 7.7
1913 Female, age 42, unknown 7.4
Ventral tegmental area
nTPM: 9.2
1915 Female, age 42, unknown 9.7
1942 Male, age 51, unknown 9.7
2218 Male, age 76, both hemispheres 9.5
2410 Female, age 72, unknown 9.5
2021 Male, age 53, unknown 9.1
2223 Female, age 72, unknown 8.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.8
Samples: 139

Max nTPM: 32.3
Min nTPM: 2.6
Std nTPM: 5.1
Median nTPM: 10.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 32.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 26.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 24.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 24.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 23.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 23.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 22.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 20.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 19.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 18.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 18.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.0
FF:10158-103A5 76 years, female 7.0

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The Human Protein Atlas

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