MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:5.5 nTPM
HPA:5.5 nTPM
GTEx:11.3 nTPM
FANTOM5:50.0 Scaled Tags Per Million
Pig:38.8 nTPM
Mouse:40.3 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 5.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.4
1833 Male, age 53, unknown 6.6
2828 Female, age 72, unknown 5.6
2411 Female, age 72, unknown 5.1
2666 Male, age 74, left hemisphere 4.7
1830 Male, age 51, unknown 4.6
2019 Male, age 18, unknown 4.6
1827 Male, age 72, unknown 4.1
1870 Female, age 42, unknown 4.0
2219 Male, age 76, both hemispheres 2.5
2586 Male, age 75, left hemisphere 2.5
Dorsal raphe nucleus
nTPM: 4.9
2016 Female, age 72, unknown 6.0
2047 Male, age 72, unknown 5.0
2750 Male, age 76, both hemispheres 4.9
1828 Male, age 53, unknown 4.7
2298 Female, age 72, unknown 4.2
Inferior colliculus
nTPM: 4.8
2849 Male, age 72, unknown 6.5
1848 Female, age 42, unknown 6.1
1890 Male, age 53, unknown 3.8
2097 Female, age 72, unknown 2.8
Median raphe nucleus
nTPM: 4.7
2220 Male, age 76, midline 4.7
Pedunculopontine tegmental nucleus
nTPM: 5.5
2338 Male, age 61, both hemispheres 6.5
2334 Male, age 80, both hemispheres 5.4
1921 Female, age 85, both hemispheres 4.6
Periaquaductal grey, anterior
nTPM: 3.7
1947 Male, age 18, unknown 4.7
1795 Male, age 51, unknown 4.4
2502 Female, age 75, unknown 2.0
Periaquaductal grey, dorsal
nTPM: 5.5
2850 Male, age 76, both hemispheres 8.6
1840 Male, age 53, unknown 4.7
1831 Male, age 72, unknown 4.6
2464 Female, age 72, unknown 4.1
Periaquaductal grey, lateral
nTPM: 5.1
2272 Male, age 74, both hemispheres 5.8
2053 Male, age 18, unknown 4.8
2140 Male, age 76, both hemispheres 4.8
Pretectal area
nTPM: 5.4
1817 Female, age 42, unknown 6.9
2007 Male, age 72, unknown 6.8
1816 Male, age 51, unknown 6.5
1815 Male, age 53, unknown 6.3
2407 Male, age 75, both hemispheres 6.2
1944 Female, age 72, unknown 5.5
2273 Male, age 74, both hemispheres 5.3
2667 Female, age 75, unknown 5.0
2825 Male, age 18, unknown 4.9
2224 Female, age 72, unknown 4.8
2316 Male, age 76, right hemisphere 1.2
Red nucleus
nTPM: 3.9
2725 Female, age 75, unknown 6.6
2503 Female, age 72, unknown 5.4
1821 Female, age 72, unknown 4.6
1865 Male, age 51, unknown 4.2
2584 Male, age 75, left hemisphere 4.2
1954 Female, age 42, unknown 3.9
2769 Male, age 72, unknown 3.6
1904 Male, age 53, unknown 3.4
2823 Male, age 76, right hemisphere 3.3
2785 Male, age 18, unknown 3.0
2227 Male, age 72, unknown 2.5
2588 Male, age 74, left hemisphere 2.2
Substantia nigra
nTPM: 4.8
2699 Male, age 18, unknown 7.0
2665 Male, age 74, both hemispheres 5.6
1889 Female, age 72, unknown 5.5
1916 Female, age 42, unknown 4.9
2583 Male, age 75, right hemisphere 4.9
2409 Female, age 72, unknown 4.6
2590 Female, age 75, unknown 4.5
2241 Male, age 72, unknown 4.2
1851 Male, age 51, unknown 3.8
1941 Male, age 53, unknown 3.3
Superior colliculus
nTPM: 4.2
2587 Male, age 74, left hemisphere 6.7
1913 Female, age 42, unknown 4.8
1796 Male, age 53, unknown 4.5
1895 Male, age 76, right hemisphere 4.5
1995 Male, age 72, unknown 4.4
1839 Male, age 51, unknown 4.1
2087 Female, age 72, unknown 4.0
2668 Female, age 75, unknown 3.9
2261 Male, age 18, unknown 2.6
2664 Male, age 75, both hemispheres 2.4
Ventral tegmental area
nTPM: 4.7
2410 Female, age 72, unknown 5.7
2218 Male, age 76, both hemispheres 5.6
2021 Male, age 53, unknown 5.2
2223 Female, age 72, unknown 4.3
1915 Female, age 42, unknown 3.9
1942 Male, age 51, unknown 3.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.3
Samples: 139

Max nTPM: 17.0
Min nTPM: 7.3
Std nTPM: 1.5
Median nTPM: 11.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 17.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 15.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 14.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 14.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 14.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 14.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 14.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 13.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 13.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 13.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 13.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.0
FF:10158-103A5 76 years, female 50.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.8
Pig sample Sample description nTPM
Midbrain
nTPM: 38.8
Samples: 4

Max nTPM: 41.0
Min nTPM: 35.9
Sample A Female 38.0
Sample B Female 35.9
Sample C Male 41.0
Sample D Male 40.4
Periaqueductal gray
nTPM: 33.9
Samples: 3

Max nTPM: 36.1
Min nTPM: 32.0
Sample B Female 32.0
Sample C Male 36.1
Sample D Male 33.7
Substantia nigra
nTPM: 36.7
Samples: 4

Max nTPM: 44.7
Min nTPM: 30.8
Sample A Female 44.7
Sample B Female 35.0
Sample C Male 36.1
Sample D Male 30.8
Superior colliculi
nTPM: 37.6
Samples: 4

Max nTPM: 40.6
Min nTPM: 31.7
Sample A Female 40.6
Sample B Female 31.7
Sample C Male 39.3
Sample D Male 38.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.3
Samples: 4

Max nTPM: 41.4
Min nTPM: 38.8
Sample A Male 39.7
Sample B Male 41.4
Sample C Female 41.2
Sample D Female 38.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
2360 Antisense, RP_Baylor_102878, Mouse strain C57BL/6J (56 days, male) 0.7
2359 Antisense, RP_Baylor_102878, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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