BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:44.2 nTPM
HPA:44.2 nTPM
GTEx:35.5 nTPM
FANTOM5:108.4 Scaled Tags Per Million
Pig:49.4 nTPM
Mouse:56.0 nTPM
Allen mouse:2.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA003302
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.3
2481 Female, age 94, left hemisphere 46.8
2288 Male, age 75, left hemisphere 41.8
1857 Female, age 85, left hemisphere 41.0
1781 Male, age 74, unknown 39.6
1854 Male, age 80, left hemisphere 38.5
2290 Female, age 72, unknown 38.4
2289 Male, age 61, right hemisphere 38.0
2846 Female, age 79, unknown 37.8
Claustrum
nTPM: 36.9
1956 Male, age 74, unknown 39.1
2292 Female, age 85, both hemispheres 38.3
2198 Male, age 80, both hemispheres 38.2
2491 Male, age 75, both hemispheres 37.8
2196 Female, age 79, unknown 37.7
2392 Female, age 94, both hemispheres 36.6
2284 Female, age 91, both hemispheres 35.0
2568 Male, age 61, both hemispheres 34.9
2645 Female, age 72, unknown 34.8
Globus pallidus, externus
nTPM: 44.2
2395 Male, age 75, both hemispheres 44.9
2772 Female, age 79, unknown 44.6
1996 Male, age 80, right hemisphere 44.4
2646 Male, age 61, right hemisphere 44.3
2567 Female, age 72, unknown 43.0
Globus pallidus, internus
nTPM: 43.0
1818 Male, age 74, unknown 44.6
2287 Male, age 75, right hemisphere 44.2
2778 Female, age 91, both hemispheres 44.2
2483 Female, age 94, right hemisphere 43.5
2111 Female, age 85, right hemisphere 42.9
2037 Male, age 80, right hemisphere 42.5
2566 Female, age 72, unknown 39.2
Nucleus accumbens
nTPM: 40.1
2391 Female, age 94, left hemisphere 44.5
2698 Female, age 72, unknown 43.0
2286 Male, age 75, left hemisphere 42.4
2824 Male, age 61, right hemisphere 40.3
1806 Female, age 85, left hemisphere 38.6
1783 Male, age 74, unknown 37.7
1856 Female, age 91, right hemisphere 37.6
2732 Male, age 80, right hemisphere 36.5
Nucleus basalis of Meynert
nTPM: 40.1
2569 Male, age 61, both hemispheres 43.0
2484 Female, age 94, left hemisphere 39.6
2821 Male, age 75, both hemispheres 39.5
2393 Male, age 80, right hemisphere 38.3
Nucleus of the diagonal band
nTPM: 37.4
1812 Female, age 91, both hemispheres 39.6
1979 Male, age 74, unknown 39.2
2195 Female, age 85, both hemispheres 37.4
2775 Male, age 80, right hemisphere 36.2
2029 Male, age 61, right hemisphere 34.8
Olfactory tubercle
nTPM: 37.6
1846 Male, age 80, right hemisphere 41.4
2856 Male, age 75, right hemisphere 38.2
1998 Female, age 91, both hemispheres 35.5
2487 Female, age 94, left hemisphere 35.4
Putamen
nTPM: 38.2
2482 Female, age 94, left hemisphere 42.8
2647 Male, age 75, left hemisphere 39.3
1838 Male, age 80, right hemisphere 38.8
1937 Female, age 91, right hemisphere 37.7
2489 Female, age 72, unknown 37.7
1829 Male, age 74, unknown 36.6
2466 Female, age 79, unknown 34.5
Septal nuclei
nTPM: 37.7
2394 Male, age 61, left hemisphere 39.1
2629 Female, age 94, right hemisphere 39.1
2031 Female, age 72, unknown 38.7
2199 Male, age 80, right hemisphere 38.7
2009 Female, age 91, both hemispheres 37.7
1960 Male, age 74, unknown 36.0
2059 Female, age 85, both hemispheres 34.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 35.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 34.2
Samples: 246

Max nTPM: 54.8
Min nTPM: 21.4
Std nTPM: 5.3
Median nTPM: 33.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 54.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 54.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 53.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 49.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 48.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 48.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 46.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 46.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 45.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 44.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 44.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 33.8
Samples: 246

Max nTPM: 57.1
Min nTPM: 22.4
Std nTPM: 5.2
Median nTPM: 32.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 57.1
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 56.2
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 51.9
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 51.1
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 51.0
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 48.2
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 48.1
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 47.2
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 46.0
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 45.4
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 45.2
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Brain - Putamen (basal ganglia)
Average nTPM: 35.5
Samples: 205

Max nTPM: 53.1
Min nTPM: 24.6
Std nTPM: 5.8
Median nTPM: 34.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 53.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 53.0
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 50.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 50.2
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 50.0
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 48.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 48.7
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 47.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 47.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 46.7
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 46.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 108.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 108.4
FF:10164-103B2 76 years, female 108.4
Globus pallidus
Scaled Tags Per Million: 62.6
FF:10161-103A8 76 years, female 92.1
FF:10175-103C4 60 years, female 33.1
Nucleus accumbens
Scaled Tags Per Million: 93.6
FF:10037-101F1 23-56 years, mixed 93.6
Putamen
Scaled Tags Per Million: 97.2
FF:10176-103C5 60 years, female 97.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 49.4
Pig sample Sample description nTPM
Caudate
nTPM: 41.9
Samples: 4

Max nTPM: 47.3
Min nTPM: 38.9
Sample A Female 38.9
Sample B Female 40.7
Sample C Male 47.3
Sample D Male 40.5
Putamen
nTPM: 49.4
Samples: 4

Max nTPM: 59.9
Min nTPM: 42.9
Sample A Female 47.5
Sample B Female 42.9
Sample C Male 59.9
Sample D Male 47.2
Septum
nTPM: 46.5
Samples: 4

Max nTPM: 51.2
Min nTPM: 43.4
Sample A Female 43.4
Sample B Female 44.5
Sample C Male 51.2
Sample D Male 46.8
Ventral pallidum
nTPM: 45.1
Samples: 4

Max nTPM: 51.8
Min nTPM: 40.3
Sample A Female 42.4
Sample B Female 45.8
Sample C Male 51.8
Sample D Male 40.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 56.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 56.1
Samples: 4

Max nTPM: 58.0
Min nTPM: 53.4
Sample A Male 55.4
Sample B Male 53.4
Sample C Female 58.0
Sample D Female 57.5
Septum
nTPM: 55.8
Samples: 4

Max nTPM: 62.6
Min nTPM: 52.4
Sample A Male 52.4
Sample B Male 55.6
Sample C Female 52.7
Sample D Female 62.6
Ventral forebrain
nTPM: 53.1
Samples: 4

Max nTPM: 54.4
Min nTPM: 51.3
Sample A Male 51.3
Sample B Male 54.4
Sample C Female 52.6
Sample D Female 53.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.9
74583203 Antisense, RP_051214_01_B05, Mouse strain C57BL/6J (56 days, male) 3.2
68443220 Antisense, RP_050111_01_E12, Mouse strain C57BL/6J (56 days, male) 2.4
75931621 Antisense, RP_060606_01_E07, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 2.3
74583203 Antisense, RP_051214_01_B05, Mouse strain C57BL/6J (56 days, male) 4.1
68443220 Antisense, RP_050111_01_E12, Mouse strain C57BL/6J (56 days, male) 2.8
75931621 Antisense, RP_060606_01_E07, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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