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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:65.7 nTPM
GTEx:52.8 nTPM
FANTOM5:70.4 Scaled Tags Per Million
Pig:57.2 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 65.7
Sample id Sample description nTPM
Putamen
nTPM: 65.7
2489 Female, age 72, unknown 101.7
1829 Male, age 74, unknown 77.8
1838 Male, age 80, right hemisphere 71.3
2466 Female, age 79, unknown 68.3
2647 Male, age 75, left hemisphere 60.0
1937 Female, age 91, right hemisphere 47.1
2482 Female, age 94, left hemisphere 34.0

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 52.8
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 52.8
Samples: 205

Max nTPM: 111.5
Min nTPM: 17.1
Std nTPM: 22.4
Median nTPM: 49.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 111.5
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 106.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 105.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 103.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 103.2
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 101.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 99.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 98.6
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 93.8
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 93.7
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 91.6
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 91.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 91.0
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 90.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 90.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 90.4
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 90.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 89.8
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 89.2
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 88.3
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 86.9
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 85.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 85.8
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 85.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 85.5
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 83.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 83.7
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 83.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 83.1
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 82.9
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 82.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 82.3
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 82.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 81.1
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 80.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 79.6
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 78.4
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 75.3
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 73.6
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 73.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 71.2
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 70.8
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 70.7
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 70.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 70.4
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 70.0
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 69.1
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 68.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 68.5
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 68.2
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 68.0
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 66.4
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 66.1
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 65.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 65.3
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 64.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 64.8
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 64.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 64.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 63.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 63.0
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 62.9
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 62.3
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 62.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 61.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 61.7
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 61.2
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 61.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 60.9
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 60.3
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 60.3
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 59.9
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 59.5
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 59.3
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 59.2
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 58.9
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 58.1
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 57.5
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 57.4
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 57.1
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 56.2
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 55.8
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 55.5
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 55.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 55.4
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 55.2
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 55.1
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 54.7
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 53.7
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 53.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 53.0
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 52.6
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 52.4
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 51.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 51.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 51.1
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 51.0
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 50.8
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 50.2
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 49.9
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 49.7
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 49.6
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 49.4
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 49.1
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 49.1
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 48.1
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 48.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 47.7
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 47.4
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 46.9
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 46.9
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 46.6
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 46.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 46.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 46.0
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 45.7
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 45.1
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 44.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 44.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 43.9
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 43.8
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 43.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 43.6
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 43.5
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 43.0
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 42.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 42.3
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 41.9
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 41.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 40.5
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 40.5
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 40.5
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 40.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 40.3
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 40.0
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 39.4
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 38.7
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 38.6
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 38.6
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 38.6
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 38.3
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 37.9
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 37.4
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 37.2
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 36.9
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 36.7
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 36.2
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 36.2
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 35.6
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 35.3
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 35.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 34.3
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 33.9
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 33.9
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 33.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 32.7
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 32.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 32.0
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 31.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 31.7
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 31.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 31.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 31.3
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 30.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 30.6
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 30.4
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 30.4
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 30.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 30.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 30.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 30.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 29.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 29.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 29.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 29.6
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 28.5
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 28.4
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 28.3
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 28.3
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 28.2
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 28.2
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 27.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 27.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 27.6
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 26.4
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 26.2
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 25.9
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 25.8
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 25.7
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 25.4
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 24.6
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 24.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 24.2
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 24.1
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 22.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 22.8
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 22.4
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 22.0
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 21.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 20.6
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 19.9
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 19.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 19.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 18.7
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 17.1
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 70.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 70.4
FF:10176-103C5 60 years, female 70.4

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 57.2
Pig sample Sample description nTPM
Putamen
nTPM: 57.2
Samples: 4

Max nTPM: 71.3
Min nTPM: 31.3
Sample A Female 31.3
Sample B Female 57.6
Sample C Male 68.5
Sample D Male 71.3

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