BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:54.3 nTPM
HPA:54.3 nTPM
GTEx:36.4 nTPM
FANTOM5:111.6 Scaled Tags Per Million
Pig:18.7 nTPM
Mouse:14.5 nTPM
Allen mouse:0.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039757
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 54.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.3
2289 Male, age 61, right hemisphere 43.6
2481 Female, age 94, left hemisphere 37.4
2288 Male, age 75, left hemisphere 37.1
1854 Male, age 80, left hemisphere 36.0
2290 Female, age 72, unknown 33.2
2846 Female, age 79, unknown 30.3
1857 Female, age 85, left hemisphere 29.6
1781 Male, age 74, unknown 27.5
Claustrum
nTPM: 29.8
2568 Male, age 61, both hemispheres 41.5
2645 Female, age 72, unknown 35.7
2292 Female, age 85, both hemispheres 32.4
2284 Female, age 91, both hemispheres 31.0
2196 Female, age 79, unknown 29.3
2491 Male, age 75, both hemispheres 26.8
2198 Male, age 80, both hemispheres 26.3
1956 Male, age 74, unknown 24.1
2392 Female, age 94, both hemispheres 21.3
Globus pallidus, externus
nTPM: 54.3
2646 Male, age 61, right hemisphere 77.1
2567 Female, age 72, unknown 68.5
1996 Male, age 80, right hemisphere 46.0
2772 Female, age 79, unknown 44.1
2395 Male, age 75, both hemispheres 35.7
Globus pallidus, internus
nTPM: 50.4
2566 Female, age 72, unknown 62.2
2111 Female, age 85, right hemisphere 57.4
2037 Male, age 80, right hemisphere 56.1
1818 Male, age 74, unknown 54.9
2778 Female, age 91, both hemispheres 48.4
2483 Female, age 94, right hemisphere 37.8
2287 Male, age 75, right hemisphere 36.2
Nucleus accumbens
nTPM: 33.0
2824 Male, age 61, right hemisphere 40.1
1783 Male, age 74, unknown 35.6
2286 Male, age 75, left hemisphere 35.5
1806 Female, age 85, left hemisphere 32.5
2391 Female, age 94, left hemisphere 32.2
2698 Female, age 72, unknown 30.1
2732 Male, age 80, right hemisphere 29.6
1856 Female, age 91, right hemisphere 28.1
Nucleus basalis of Meynert
nTPM: 44.2
2569 Male, age 61, both hemispheres 71.8
2484 Female, age 94, left hemisphere 37.2
2821 Male, age 75, both hemispheres 36.8
2393 Male, age 80, right hemisphere 30.8
Nucleus of the diagonal band
nTPM: 23.5
1979 Male, age 74, unknown 28.0
2029 Male, age 61, right hemisphere 25.7
2195 Female, age 85, both hemispheres 24.3
2775 Male, age 80, right hemisphere 21.5
1812 Female, age 91, both hemispheres 18.2
Olfactory tubercle
nTPM: 23.3
2856 Male, age 75, right hemisphere 25.6
1998 Female, age 91, both hemispheres 24.5
2487 Female, age 94, left hemisphere 22.3
1846 Male, age 80, right hemisphere 20.6
Putamen
nTPM: 39.3
2489 Female, age 72, unknown 52.5
2647 Male, age 75, left hemisphere 49.3
2466 Female, age 79, unknown 39.1
1829 Male, age 74, unknown 37.8
2482 Female, age 94, left hemisphere 34.9
1838 Male, age 80, right hemisphere 31.0
1937 Female, age 91, right hemisphere 30.3
Septal nuclei
nTPM: 26.2
2199 Male, age 80, right hemisphere 34.2
2059 Female, age 85, both hemispheres 33.6
2394 Male, age 61, left hemisphere 32.2
2009 Female, age 91, both hemispheres 22.1
2629 Female, age 94, right hemisphere 21.1
1960 Male, age 74, unknown 20.5
2031 Female, age 72, unknown 19.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 36.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.9
Samples: 246

Max nTPM: 89.9
Min nTPM: 12.5
Std nTPM: 11.9
Median nTPM: 34.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 89.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 77.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 72.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 69.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 68.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 67.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 65.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 64.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 64.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 59.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 59.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 30.8
Samples: 246

Max nTPM: 94.9
Min nTPM: 6.8
Std nTPM: 10.4
Median nTPM: 29.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 94.9
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 71.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 67.8
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 59.8
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 57.2
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 56.6
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 56.1
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 56.0
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 54.1
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 50.7
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 50.6
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Brain - Putamen (basal ganglia)
Average nTPM: 36.4
Samples: 205

Max nTPM: 76.0
Min nTPM: 9.2
Std nTPM: 11.6
Median nTPM: 34.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 76.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 70.3
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 69.7
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 68.3
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 68.1
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 61.7
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 60.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 60.2
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 58.7
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 57.2
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 57.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 111.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 81.2
FF:10164-103B2 76 years, female 81.2
Globus pallidus
Scaled Tags Per Million: 88.6
FF:10161-103A8 76 years, female 95.2
FF:10175-103C4 60 years, female 82.0
Nucleus accumbens
Scaled Tags Per Million: 103.7
FF:10037-101F1 23-56 years, mixed 103.7
Putamen
Scaled Tags Per Million: 111.6
FF:10176-103C5 60 years, female 111.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 18.7
Pig sample Sample description nTPM
Caudate
nTPM: 15.1
Samples: 4

Max nTPM: 16.8
Min nTPM: 12.6
Sample A Female 12.6
Sample B Female 15.6
Sample C Male 15.4
Sample D Male 16.8
Putamen
nTPM: 18.7
Samples: 4

Max nTPM: 21.8
Min nTPM: 16.4
Sample A Female 19.5
Sample B Female 16.9
Sample C Male 16.4
Sample D Male 21.8
Septum
nTPM: 13.6
Samples: 4

Max nTPM: 14.1
Min nTPM: 13.1
Sample A Female 13.5
Sample B Female 14.1
Sample C Male 13.1
Sample D Male 13.7
Ventral pallidum
nTPM: 16.1
Samples: 4

Max nTPM: 17.7
Min nTPM: 13.1
Sample A Female 13.1
Sample B Female 16.0
Sample C Male 17.6
Sample D Male 17.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.2
Samples: 4

Max nTPM: 15.3
Min nTPM: 12.5
Sample A Male 14.1
Sample B Male 15.3
Sample C Female 12.5
Sample D Female 15.0
Septum
nTPM: 14.5
Samples: 4

Max nTPM: 15.9
Min nTPM: 13.2
Sample A Male 14.6
Sample B Male 15.9
Sample C Female 13.2
Sample D Female 14.2
Ventral forebrain
nTPM: 13.9
Samples: 4

Max nTPM: 14.4
Min nTPM: 13.2
Sample A Male 13.5
Sample B Male 14.4
Sample C Female 14.3
Sample D Female 13.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
69262231 Antisense, RP_050301_01_F11, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 0.6
69262231 Antisense, RP_050301_01_F11, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

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