BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:8.0 nTPM
HPA:8.0 nTPM
GTEx:8.3 nTPM
FANTOM5:23.6 Scaled Tags Per Million
Pig:6.1 nTPM
Mouse:0.1 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 8.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 7.0
2288 Male, age 75, left hemisphere 11.8
2289 Male, age 61, right hemisphere 9.7
2290 Female, age 72, unknown 8.7
1781 Male, age 74, unknown 6.9
2846 Female, age 79, unknown 6.0
1857 Female, age 85, left hemisphere 5.9
1854 Male, age 80, left hemisphere 5.0
2481 Female, age 94, left hemisphere 2.0
Claustrum
nTPM: 8.0
2645 Female, age 72, unknown 14.0
2568 Male, age 61, both hemispheres 11.1
2284 Female, age 91, both hemispheres 10.9
2491 Male, age 75, both hemispheres 9.7
2198 Male, age 80, both hemispheres 6.6
2392 Female, age 94, both hemispheres 6.1
2292 Female, age 85, both hemispheres 5.1
2196 Female, age 79, unknown 4.6
1956 Male, age 74, unknown 4.3
Globus pallidus, externus
nTPM: 2.6
2646 Male, age 61, right hemisphere 5.1
2772 Female, age 79, unknown 3.2
2567 Female, age 72, unknown 2.3
2395 Male, age 75, both hemispheres 1.4
1996 Male, age 80, right hemisphere 0.8
Globus pallidus, internus
nTPM: 2.1
1818 Male, age 74, unknown 3.3
2566 Female, age 72, unknown 2.7
2037 Male, age 80, right hemisphere 2.4
2778 Female, age 91, both hemispheres 2.4
2111 Female, age 85, right hemisphere 2.3
2483 Female, age 94, right hemisphere 0.9
2287 Male, age 75, right hemisphere 0.7
Nucleus accumbens
nTPM: 5.5
2286 Male, age 75, left hemisphere 9.4
1783 Male, age 74, unknown 8.1
2824 Male, age 61, right hemisphere 6.8
1856 Female, age 91, right hemisphere 6.7
1806 Female, age 85, left hemisphere 6.0
2391 Female, age 94, left hemisphere 3.9
2698 Female, age 72, unknown 2.3
2732 Male, age 80, right hemisphere 0.3
Nucleus basalis of Meynert
nTPM: 5.6
2484 Female, age 94, left hemisphere 6.9
2821 Male, age 75, both hemispheres 6.4
2393 Male, age 80, right hemisphere 5.4
2569 Male, age 61, both hemispheres 3.8
Nucleus of the diagonal band
nTPM: 3.4
2029 Male, age 61, right hemisphere 6.5
2195 Female, age 85, both hemispheres 5.1
2775 Male, age 80, right hemisphere 3.8
1979 Male, age 74, unknown 0.9
1812 Female, age 91, both hemispheres 0.8
Olfactory tubercle
nTPM: 5.2
1998 Female, age 91, both hemispheres 7.6
2856 Male, age 75, right hemisphere 7.0
2487 Female, age 94, left hemisphere 5.4
1846 Male, age 80, right hemisphere 1.0
Putamen
nTPM: 7.6
2466 Female, age 79, unknown 9.6
2489 Female, age 72, unknown 8.5
1838 Male, age 80, right hemisphere 8.4
1937 Female, age 91, right hemisphere 8.1
2647 Male, age 75, left hemisphere 8.1
1829 Male, age 74, unknown 6.5
2482 Female, age 94, left hemisphere 4.1
Septal nuclei
nTPM: 3.9
2059 Female, age 85, both hemispheres 5.7
2394 Male, age 61, left hemisphere 5.6
1960 Male, age 74, unknown 5.4
2031 Female, age 72, unknown 3.3
2629 Female, age 94, right hemisphere 3.3
2009 Female, age 91, both hemispheres 3.1
2199 Male, age 80, right hemisphere 0.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.3
Samples: 246

Max nTPM: 18.4
Min nTPM: 0.9
Std nTPM: 4.1
Median nTPM: 8.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 18.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 18.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 18.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 17.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 17.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 17.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 16.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 16.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 16.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 16.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 16.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.0
Samples: 246

Max nTPM: 20.7
Min nTPM: 0.5
Std nTPM: 3.8
Median nTPM: 7.8
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 20.7
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 20.3
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 18.7
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 17.1
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 16.0
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 15.8
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 15.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 15.0
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 15.0
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 15.0
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 14.8
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Brain - Putamen (basal ganglia)
Average nTPM: 7.5
Samples: 205

Max nTPM: 19.3
Min nTPM: 0.4
Std nTPM: 3.9
Median nTPM: 7.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 19.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 15.4
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 15.4
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 15.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 14.7
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 14.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 14.7
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 14.5
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 14.5
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 14.2
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 14.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.0
FF:10164-103B2 76 years, female 20.0
Globus pallidus
Scaled Tags Per Million: 14.0
FF:10175-103C4 60 years, female 19.7
FF:10161-103A8 76 years, female 8.3
Nucleus accumbens
Scaled Tags Per Million: 19.7
FF:10037-101F1 23-56 years, mixed 19.7
Putamen
Scaled Tags Per Million: 23.6
FF:10176-103C5 60 years, female 23.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.1
Pig sample Sample description nTPM
Caudate
nTPM: 5.8
Samples: 4

Max nTPM: 7.2
Min nTPM: 3.5
Sample A Female 3.5
Sample B Female 7.2
Sample C Male 6.0
Sample D Male 6.6
Putamen
nTPM: 6.1
Samples: 4

Max nTPM: 8.3
Min nTPM: 2.2
Sample A Female 2.2
Sample B Female 8.3
Sample C Male 5.8
Sample D Male 8.2
Septum
nTPM: 3.5
Samples: 4

Max nTPM: 4.7
Min nTPM: 2.7
Sample A Female 3.5
Sample B Female 4.7
Sample C Male 2.9
Sample D Male 2.7
Ventral pallidum
nTPM: 4.3
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.6
Sample A Female 3.6
Sample B Female 5.3
Sample C Male 3.7
Sample D Male 4.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.2
Sample B Male 0.0
Sample C Female 0.2
Sample D Female 0.1
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Ventral forebrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

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The Human Protein Atlas

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