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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
227.095
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:134.4 nTPM
HPA:134.4 nTPM
GTEx:251.7 nTPM
FANTOM5:201.9 Scaled Tags Per Million
Pig:17.7 nTPM
Mouse:417.7 nTPM
Allen mouse:13.4 Expression energy

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody HPA045039
Amygdala mean intensity 227.095
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Nucleus of the lateral olfactory tract 87.121
Basal medial amygdaloid nucleus 84.832
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 64.605
Cortical amygdala 55.132
Central amygdala 154.509
Medial amygdaloid nucleus 87.241

AMYGDALA - HPA Brain RNA-seq
Max nTPM 134.4
Sample id Sample description nTPM
Amygdala
nTPM: 106.7
2517 Female, age 94, left hemisphere 125.6
2514 Male, age 75, right hemisphere 114.6
1987 Female, age 91, left hemisphere 112.1
2814 Male, age 76, right hemisphere 92.6
2695 Female, age 67, right hemisphere 88.7
Basal amygdala
nTPM: 124.8
2243 Female, age 91, right hemisphere 146.3
2685 Female, age 94, left hemisphere 132.5
2609 Male, age 75, right hemisphere 123.0
2110 Male, age 80, left hemisphere 120.0
2827 Female, age 67, right hemisphere 114.9
1955 Male, age 76, both hemispheres 112.3
Central amygdala
nTPM: 112.5
2826 Female, age 94, left hemisphere 146.5
2239 Male, age 80, left hemisphere 122.9
2515 Male, age 75, right hemisphere 103.6
2701 Female, age 91, right hemisphere 98.9
1905 Male, age 76, both hemispheres 90.5
Corticomedial amygdala
nTPM: 134.4
2829 Male, age 80, left hemisphere 173.1
2428 Male, age 75, right hemisphere 134.1
2429 Female, age 94, left hemisphere 133.2
2242 Female, age 91, right hemisphere 130.6
2535 Female, age 67, right hemisphere 122.0
2240 Male, age 76, both hemispheres 113.2
Lateral amygdala
nTPM: 119.2
2534 Female, age 94, left hemisphere 167.5
2256 Male, age 80, left hemisphere 121.6
1883 Male, age 76, both hemispheres 110.2
2516 Male, age 75, right hemisphere 109.9
2255 Female, age 91, right hemisphere 103.7
2830 Female, age 67, right hemisphere 102.2
Stria terminalis, bed nucleus
nTPM: 117.9
1974 Female, age 91, both hemispheres 132.4
2486 Female, age 94, both hemispheres 120.1
2201 Male, age 74, unknown 101.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 251.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 251.7
Samples: 152

Max nTPM: 875.2
Min nTPM: 13.1
Std nTPM: 161.8
Median nTPM: 213.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 875.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 727.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 707.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 639.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 623.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 595.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 554.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 522.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 521.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 519.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 511.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 510.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 483.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 474.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 474.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 471.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 471.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 467.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 459.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 444.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 442.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 428.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 423.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 414.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 412.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 411.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 406.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 404.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 403.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 402.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 400.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 395.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 389.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 389.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 385.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 373.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 364.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 363.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 360.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 356.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 353.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 351.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 346.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 345.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 324.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 322.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 318.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 315.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 313.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 303.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 289.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 288.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 281.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 277.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 275.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 272.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 271.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 271.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 271.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 266.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 260.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 251.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 242.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 238.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 236.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 234.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 229.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 227.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 226.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 222.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 219.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 218.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 218.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 218.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 216.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 215.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 211.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 202.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 201.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 201.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 201.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 201.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 199.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 197.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 195.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 193.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 189.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 185.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 184.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 182.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 181.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 179.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 179.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 178.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 176.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 174.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 166.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 166.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 166.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 165.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 164.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 157.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 146.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 144.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 143.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 141.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 139.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 135.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 135.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 133.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 133.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 131.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 131.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 129.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 128.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 128.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 127.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 125.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 119.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 116.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 116.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 114.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 112.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 106.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 105.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 101.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 99.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 95.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 95.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 91.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 87.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 84.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 84.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 83.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 78.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 74.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 73.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 70.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 69.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 66.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 66.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 62.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 58.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 58.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 53.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 49.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 41.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 40.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 34.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 30.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 21.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 13.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 201.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 201.9
FF:10151-102I7 76 years, female 201.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 17.7
Pig sample Sample description nTPM
Amygdala
nTPM: 17.7
Samples: 4

Max nTPM: 22.3
Min nTPM: 13.8
Sample A Female 22.3
Sample B Female 16.3
Sample C Male 13.8
Sample D Male 18.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 417.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 417.7
Samples: 4

Max nTPM: 461.2
Min nTPM: 351.7
Sample A Male 403.2
Sample B Male 454.6
Sample C Female 461.2
Sample D Female 351.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 13.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.4
200 Antisense, RP_Baylor_102666, Mouse strain C57BL/6J (56 days, male) 14.0
77869074 Antisense, RP_070129_02_G01, Mouse strain C57BL/6J (56 days, male) 12.8
201 Antisense, RP_Baylor_102666, Mouse strain C57BL/6J (56 days, male) 12.2

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