HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi 		86.055
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:160.1 nTPM
HPA:160.1 nTPM
GTEx:153.7 nTPM
FANTOM5:211.9 Scaled Tags Per Million
Pig:46.8 nTPM
Mouse:497.0 nTPM
Allen mouse:14.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA069515
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA045039
Hippocampal formation mean intensity 86.055
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 53.097
Molecular layer of the dentate gyrus 38.456
Granular dentate gyrus 37.247
CA1 - oriens layer 58.856
CA1 - pyramidal layer 55.267
CA1 - radiatum layer 46.784
CA2 - oriens layer 54.828
CA2 - pyramidal layer 49.766
CA2 - radiatum layer 47.532
CA3 - oriens layer 33.375
CA3 - pyramidal layer 37.951
CA3 - radiatum layer 37.486
Stratum lucidum 48.866
Lacunosum moleculare 25.825
Subiculum 58.975

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 160.1
Sample id Sample description nTPM
Hippocampus
nTPM: 133.8
1898 Male, age 80, left hemisphere 186.2
1855 Male, age 76, left hemisphere 135.9
2529 Female, age 94, left hemisphere 121.4
1911 Female, age 85, right hemisphere 121.0
2148 Female, age 91, left hemisphere 120.8
2621 Female, age 67, right hemisphere 117.4
Dentate gyrus
nTPM: 129.9
2528 Male, age 74, both hemispheres 152.5
1927 Female, age 91, both hemispheres 146.5
2246 Female, age 85, both hemispheres 135.7
2010 Male, age 76, both hemispheres 121.1
2530 Female, age 94, left hemisphere 116.5
2531 Female, age 67, both hemispheres 106.9
Entorhinal gyrus
nTPM: 118.5
2764 Male, age 80, right hemisphere 132.7
1787 Male, age 76, left hemisphere 127.0
2686 Male, age 75, right hemisphere 118.3
1938 Female, age 85, left hemisphere 116.0
2117 Female, age 91, right hemisphere 114.7
2613 Female, age 94, left hemisphere 102.1
Hippocampus, CA1
nTPM: 128.4
1873 Female, age 85, both hemispheres 157.7
2527 Male, age 74, both hemispheres 129.6
2749 Male, age 80, left hemisphere 121.5
2082 Female, age 91, right hemisphere 118.9
2045 Male, age 76, both hemispheres 114.6
Hippocampus, CA2
nTPM: 142.7
1892 Male, age 76, both hemispheres 169.5
1963 Male, age 80, left hemisphere 148.4
1940 Female, age 85, left hemisphere 141.2
2437 Female, age 94, left hemisphere 139.8
2249 Male, age 74, both hemispheres 129.5
2113 Female, age 91, right hemisphere 127.6
Hippocampus, CA3
nTPM: 114.2
2436 Male, age 74, both hemispheres 124.1
2861 Female, age 67, both hemispheres 119.7
1867 Male, age 76, both hemispheres 113.6
1891 Female, age 85, both hemispheres 113.6
2137 Male, age 80, left hemisphere 111.3
2620 Female, age 94, left hemisphere 102.6
Parahippocampal cortex
nTPM: 142.6
2250 Female, age 67, right hemisphere 166.4
2532 Female, age 72, left hemisphere 159.5
2693 Female, age 94, both hemispheres 158.3
2018 Male, age 76, both hemispheres 154.2
1850 Male, age 80, both hemispheres 148.5
2245 Female, age 91, both hemispheres 146.2
1933 Female, age 85, both hemispheres 143.6
2622 Female, age 67, right hemisphere 142.3
1990 Female, age 91, right hemisphere 112.5
2692 Male, age 74, both hemispheres 94.8
Perirhinal gyrus
nTPM: 160.1
2521 Female, age 94, right hemisphere 186.3
1794 Male, age 80, right hemisphere 177.8
1841 Female, age 85, right hemisphere 159.3
2848 Male, age 76, right hemisphere 140.0
1847 Female, age 91, left hemisphere 137.0
Subiculum
nTPM: 114.2
2729 Female, age 91, right hemisphere 128.8
1977 Female, age 85, both hemispheres 125.9
2042 Male, age 76, both hemispheres 115.4
2619 Male, age 74, both hemispheres 115.4
1901 Male, age 80, both hemispheres 104.5
2438 Female, age 94, left hemisphere 95.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 153.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 153.7
Samples: 197

Max nTPM: 702.6
Min nTPM: 5.8
Std nTPM: 129.4
Median nTPM: 113.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 702.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 699.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 627.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 525.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 521.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 509.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 491.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 465.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 453.5
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 425.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 422.2
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 211.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 211.9
FF:10169-103B7 60 years, female 298.2
FF:10153-102I9 76 years, female 125.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 46.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 13.6
Samples: 4

Max nTPM: 17.9
Min nTPM: 8.6
Sample A Female 17.9
Sample B Female 12.3
Sample C Male 15.7
Sample D Male 8.6
Entorhinal cortex
nTPM: 46.8
Samples: 4

Max nTPM: 54.1
Min nTPM: 36.2
Sample A Female 52.4
Sample B Female 54.1
Sample C Male 44.6
Sample D Male 36.2
Subiculum
nTPM: 30.7
Samples: 4

Max nTPM: 38.8
Min nTPM: 21.4
Sample A Female 38.8
Sample B Female 27.2
Sample C Male 21.4
Sample D Male 35.4
Ventral hippocampus
nTPM: 12.5
Samples: 4

Max nTPM: 14.0
Min nTPM: 11.5
Sample A Female 12.1
Sample B Female 11.5
Sample C Male 14.0
Sample D Male 12.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 497.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 418.8
Samples: 4

Max nTPM: 458.5
Min nTPM: 383.0
Sample A Male 426.7
Sample B Male 458.5
Sample C Female 407.0
Sample D Female 383.0
Hippocampal formation
nTPM: 497.1
Samples: 4

Max nTPM: 548.5
Min nTPM: 447.9
Sample A Male 530.1
Sample B Male 461.7
Sample C Female 548.5
Sample D Female 447.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.6
77869074 Antisense, RP_070129_02_G01, Mouse strain C57BL/6J (56 days, male) 17.2
200 Antisense, RP_Baylor_102666, Mouse strain C57BL/6J (56 days, male) 12.0
201 Antisense, RP_Baylor_102666, Mouse strain C57BL/6J (56 days, male) 11.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.