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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:240.6 nTPM
HPA:240.6 nTPM
GTEx:247.2 nTPM
FANTOM5:279.1 Scaled Tags Per Million
Pig:115.1 nTPM
Mouse:252.3 nTPM
Allen mouse:1.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 240.6
Sample id Sample description nTPM
Amygdala
nTPM: 221.3
2695 Female, age 67, right hemisphere 263.4
2514 Male, age 75, right hemisphere 216.8
2517 Female, age 94, left hemisphere 213.2
1987 Female, age 91, left hemisphere 206.9
2814 Male, age 76, right hemisphere 206.2
Basal amygdala
nTPM: 214.2
2827 Female, age 67, right hemisphere 282.1
2685 Female, age 94, left hemisphere 217.4
2609 Male, age 75, right hemisphere 209.4
2110 Male, age 80, left hemisphere 197.7
1955 Male, age 76, both hemispheres 195.2
2243 Female, age 91, right hemisphere 183.5
Central amygdala
nTPM: 240.6
2826 Female, age 94, left hemisphere 380.5
2515 Male, age 75, right hemisphere 235.9
2239 Male, age 80, left hemisphere 198.7
1905 Male, age 76, both hemispheres 194.2
2701 Female, age 91, right hemisphere 193.9
Corticomedial amygdala
nTPM: 198.6
2535 Female, age 67, right hemisphere 215.9
2428 Male, age 75, right hemisphere 207.6
2829 Male, age 80, left hemisphere 200.2
2240 Male, age 76, both hemispheres 199.9
2242 Female, age 91, right hemisphere 185.4
2429 Female, age 94, left hemisphere 182.9
Lateral amygdala
nTPM: 237.9
2830 Female, age 67, right hemisphere 323.9
2534 Female, age 94, left hemisphere 263.9
2516 Male, age 75, right hemisphere 255.3
1883 Male, age 76, both hemispheres 204.0
2256 Male, age 80, left hemisphere 202.0
2255 Female, age 91, right hemisphere 178.1
Stria terminalis, bed nucleus
nTPM: 186.0
1974 Female, age 91, both hemispheres 204.9
2201 Male, age 74, unknown 185.1
2486 Female, age 94, both hemispheres 168.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 247.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 247.2
Samples: 152

Max nTPM: 713.2
Min nTPM: 138.7
Std nTPM: 84.2
Median nTPM: 225.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 713.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 515.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 463.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 444.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 412.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 406.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 404.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 394.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 392.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 389.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 389.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 386.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 384.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 383.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 377.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 370.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 366.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 364.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 362.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 348.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 347.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 343.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 339.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 330.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 320.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 318.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 313.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 311.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 310.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 306.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 305.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 304.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 304.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 300.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 298.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 288.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 288.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 283.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 280.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 277.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 274.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 271.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 270.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 269.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 269.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 268.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 265.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 263.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 262.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 262.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 260.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 257.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 254.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 252.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 252.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 249.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 247.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 245.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 245.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 245.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 240.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 239.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 238.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 238.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 237.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 233.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 232.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 231.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 231.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 230.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 230.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 230.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 228.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 227.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 226.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 225.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 225.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 222.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 222.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 220.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 220.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 219.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 217.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 217.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 216.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 216.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 216.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 214.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 213.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 213.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 213.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 212.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 211.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 210.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 209.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 204.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 203.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 202.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 202.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 197.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 197.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 196.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 196.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 193.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 192.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 191.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 189.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 188.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 188.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 187.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 187.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 187.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 187.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 186.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 186.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 186.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 185.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 184.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 183.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 183.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 182.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 180.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 179.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 179.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 178.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 178.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 177.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 177.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 176.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 175.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 175.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 174.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 170.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 169.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 168.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 168.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 167.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 166.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 164.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 163.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 163.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 162.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 159.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 158.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 156.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 156.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 156.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 151.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 149.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 149.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 141.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 138.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 279.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 279.1
FF:10151-102I7 76 years, female 279.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 115.1
Pig sample Sample description nTPM
Amygdala
nTPM: 115.1
Samples: 4

Max nTPM: 138.2
Min nTPM: 98.1
Sample A Female 124.4
Sample B Female 138.2
Sample C Male 98.1
Sample D Male 99.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 252.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 252.3
Samples: 4

Max nTPM: 266.6
Min nTPM: 228.5
Sample A Male 259.4
Sample B Male 266.6
Sample C Female 228.5
Sample D Female 254.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.9
75198178 Antisense, RP_060502_02_B04, Mouse strain C57BL/6J (56 days, male) 1.9

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