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NAP1L1
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  • NAP1L1
BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:207.8 nTPM
HPA:207.8 nTPM
GTEx:252.9 nTPM
FANTOM5:320.6 Scaled Tags Per Million
Pig:141.8 nTPM
Mouse:257.3 nTPM
Allen mouse:1.2 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA028861
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 207.8
Sample id Sample description nTPM
Hippocampus
nTPM: 202.2
1898 Male, age 80, left hemisphere 225.2
1911 Female, age 85, right hemisphere 201.2
1855 Male, age 76, left hemisphere 201.1
2529 Female, age 94, left hemisphere 201.0
2621 Female, age 67, right hemisphere 198.9
2148 Female, age 91, left hemisphere 186.0
Dentate gyrus
nTPM: 207.8
2530 Female, age 94, left hemisphere 257.1
2010 Male, age 76, both hemispheres 220.9
1927 Female, age 91, both hemispheres 207.0
2531 Female, age 67, both hemispheres 192.1
2246 Female, age 85, both hemispheres 192.0
2528 Male, age 74, both hemispheres 177.9
Entorhinal gyrus
nTPM: 205.1
2686 Male, age 75, right hemisphere 233.7
1787 Male, age 76, left hemisphere 207.9
2117 Female, age 91, right hemisphere 204.5
1938 Female, age 85, left hemisphere 200.3
2764 Male, age 80, right hemisphere 194.9
2613 Female, age 94, left hemisphere 189.3
Hippocampus, CA1
nTPM: 199.1
2749 Male, age 80, left hemisphere 216.6
1873 Female, age 85, both hemispheres 206.9
2045 Male, age 76, both hemispheres 199.6
2082 Female, age 91, right hemisphere 190.0
2527 Male, age 74, both hemispheres 182.3
Hippocampus, CA2
nTPM: 203.8
1892 Male, age 76, both hemispheres 224.5
1963 Male, age 80, left hemisphere 222.3
1940 Female, age 85, left hemisphere 202.7
2437 Female, age 94, left hemisphere 198.7
2113 Female, age 91, right hemisphere 191.6
2249 Male, age 74, both hemispheres 183.3
Hippocampus, CA3
nTPM: 186.8
2137 Male, age 80, left hemisphere 212.9
1867 Male, age 76, both hemispheres 210.5
1891 Female, age 85, both hemispheres 201.5
2861 Female, age 67, both hemispheres 172.3
2436 Male, age 74, both hemispheres 167.8
2620 Female, age 94, left hemisphere 155.7
Parahippocampal cortex
nTPM: 193.5
1850 Male, age 80, both hemispheres 215.2
2018 Male, age 76, both hemispheres 209.7
1933 Female, age 85, both hemispheres 199.2
2532 Female, age 72, left hemisphere 197.2
1990 Female, age 91, right hemisphere 194.5
2692 Male, age 74, both hemispheres 192.6
2245 Female, age 91, both hemispheres 189.9
2250 Female, age 67, right hemisphere 179.8
2622 Female, age 67, right hemisphere 179.3
2693 Female, age 94, both hemispheres 177.9
Perirhinal gyrus
nTPM: 200.4
1841 Female, age 85, right hemisphere 211.4
2848 Male, age 76, right hemisphere 210.0
1794 Male, age 80, right hemisphere 205.8
1847 Female, age 91, left hemisphere 200.6
2521 Female, age 94, right hemisphere 174.1
Subiculum
nTPM: 202.5
2438 Female, age 94, left hemisphere 223.2
1901 Male, age 80, both hemispheres 218.6
2042 Male, age 76, both hemispheres 212.2
2729 Female, age 91, right hemisphere 191.2
1977 Female, age 85, both hemispheres 190.1
2619 Male, age 74, both hemispheres 179.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 252.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 252.9
Samples: 197

Max nTPM: 718.4
Min nTPM: 131.3
Std nTPM: 91.9
Median nTPM: 224.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 718.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 656.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 601.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 508.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 501.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 478.9
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 449.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 439.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 437.6
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 436.4
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 434.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 432.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 421.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 406.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 402.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 399.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 399.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 393.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 392.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 389.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 384.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 382.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 374.3
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 367.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 357.7
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 356.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 355.2
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 347.0
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 339.1
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 336.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 328.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 327.6
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 327.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 326.3
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 325.2
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 320.3
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 320.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 314.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 304.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 303.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 300.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 298.8
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 297.1
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 294.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 293.6
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 288.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 285.4
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 280.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 279.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 277.8
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 276.4
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 275.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 273.5
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 271.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 269.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 268.7
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 266.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 264.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 263.0
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 259.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 259.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 258.6
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 257.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 256.7
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 255.7
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 253.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 253.3
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 251.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 249.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 248.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 246.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 245.3
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 241.9
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 241.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 241.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 240.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 240.0
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 239.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 239.2
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 237.9
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 237.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 233.7
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 233.4
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 233.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 232.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 232.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 232.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 231.8
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 230.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 230.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 229.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 228.5
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 228.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 226.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 226.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 226.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 224.8
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 224.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 224.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 223.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 222.9
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 222.7
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 221.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 220.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 219.2
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 219.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 218.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 218.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 218.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 218.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 218.4
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 218.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 218.1
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 217.7
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 216.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 216.7
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 215.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 215.7
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 215.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 215.3
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 215.1
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 213.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 212.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 212.4
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 211.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 210.9
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 210.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 209.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 209.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 209.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 209.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 206.5
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 206.2
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 205.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 205.8
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 205.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 204.7
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 204.3
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 204.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 203.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 202.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 200.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 199.3
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 198.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 198.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 198.0
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 197.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 195.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 195.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 194.4
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 192.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 192.3
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 192.0
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 190.8
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 190.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 190.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 190.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 188.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 187.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 187.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 186.6
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 186.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 186.1
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 185.4
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 184.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 184.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 182.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 182.2
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 180.6
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 179.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 177.6
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 177.2
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 175.2
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 175.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 173.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 173.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 172.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 171.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 170.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 169.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 169.5
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 167.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 164.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 163.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 162.6
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 161.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 157.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 155.5
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 155.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 154.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 150.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 148.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 147.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 144.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 141.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 135.2
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 131.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 320.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 320.6
FF:10169-103B7 60 years, female 366.2
FF:10153-102I9 76 years, female 275.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 141.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 141.8
Samples: 4

Max nTPM: 171.8
Min nTPM: 109.6
Sample A Female 171.8
Sample B Female 137.5
Sample C Male 148.2
Sample D Male 109.6
Entorhinal cortex
nTPM: 131.7
Samples: 4

Max nTPM: 169.0
Min nTPM: 107.0
Sample A Female 128.6
Sample B Female 169.0
Sample C Male 122.1
Sample D Male 107.0
Subiculum
nTPM: 125.4
Samples: 4

Max nTPM: 148.9
Min nTPM: 105.8
Sample A Female 148.9
Sample B Female 117.4
Sample C Male 105.8
Sample D Male 129.4
Ventral hippocampus
nTPM: 117.3
Samples: 4

Max nTPM: 130.2
Min nTPM: 104.4
Sample A Female 127.9
Sample B Female 106.5
Sample C Male 104.4
Sample D Male 130.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 257.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 257.3
Samples: 4

Max nTPM: 294.3
Min nTPM: 235.7
Sample A Male 235.7
Sample B Male 294.3
Sample C Female 240.8
Sample D Female 258.2
Hippocampal formation
nTPM: 212.5
Samples: 4

Max nTPM: 256.0
Min nTPM: 184.3
Sample A Male 256.0
Sample B Male 210.6
Sample C Female 184.3
Sample D Female 199.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
75198178 Antisense, RP_060502_02_B04, Mouse strain C57BL/6J (56 days, male) 1.2

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