MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:239.0 nTPM
HPA:239.0 nTPM
GTEx:326.4 nTPM
FANTOM5:373.9 Scaled Tags Per Million
Pig:176.7 nTPM
Mouse:202.1 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 239.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 220.9
2666 Male, age 74, left hemisphere 252.7
2586 Male, age 75, left hemisphere 228.2
2411 Female, age 72, unknown 224.8
1827 Male, age 72, unknown 222.9
1833 Male, age 53, unknown 222.7
1830 Male, age 51, unknown 221.1
1870 Female, age 42, unknown 219.5
2828 Female, age 72, unknown 214.4
2019 Male, age 18, unknown 210.2
2219 Male, age 76, both hemispheres 192.5
Dorsal raphe nucleus
nTPM: 211.1
2016 Female, age 72, unknown 227.9
1828 Male, age 53, unknown 220.5
2750 Male, age 76, both hemispheres 207.7
2047 Male, age 72, unknown 206.7
2298 Female, age 72, unknown 192.5
Inferior colliculus
nTPM: 203.4
1890 Male, age 53, unknown 209.5
1848 Female, age 42, unknown 208.7
2849 Male, age 72, unknown 199.7
2097 Female, age 72, unknown 195.7
Median raphe nucleus
nTPM: 200.8
2220 Male, age 76, midline 200.8
Pedunculopontine tegmental nucleus
nTPM: 209.0
2334 Male, age 80, both hemispheres 218.1
2338 Male, age 61, both hemispheres 210.1
1921 Female, age 85, both hemispheres 199.0
Periaquaductal grey, anterior
nTPM: 223.3
2502 Female, age 75, unknown 234.5
1947 Male, age 18, unknown 224.2
1795 Male, age 51, unknown 211.3
Periaquaductal grey, dorsal
nTPM: 206.2
1831 Male, age 72, unknown 217.4
2850 Male, age 76, both hemispheres 205.2
2464 Female, age 72, unknown 203.9
1840 Male, age 53, unknown 198.4
Periaquaductal grey, lateral
nTPM: 204.9
2053 Male, age 18, unknown 221.8
2140 Male, age 76, both hemispheres 197.8
2272 Male, age 74, both hemispheres 195.2
Pretectal area
nTPM: 208.8
1815 Male, age 53, unknown 220.3
2407 Male, age 75, both hemispheres 217.8
2825 Male, age 18, unknown 216.1
1816 Male, age 51, unknown 211.9
2316 Male, age 76, right hemisphere 211.3
1944 Female, age 72, unknown 210.9
1817 Female, age 42, unknown 207.1
2007 Male, age 72, unknown 207.1
2224 Female, age 72, unknown 198.5
2273 Male, age 74, both hemispheres 197.8
2667 Female, age 75, unknown 197.8
Red nucleus
nTPM: 239.0
2588 Male, age 74, left hemisphere 268.9
2503 Female, age 72, unknown 262.8
2584 Male, age 75, left hemisphere 253.8
1821 Female, age 72, unknown 251.8
2725 Female, age 75, unknown 243.2
1865 Male, age 51, unknown 236.4
1904 Male, age 53, unknown 232.0
2823 Male, age 76, right hemisphere 229.5
1954 Female, age 42, unknown 229.4
2769 Male, age 72, unknown 224.6
2227 Male, age 72, unknown 222.1
2785 Male, age 18, unknown 214.0
Substantia nigra
nTPM: 229.4
2241 Male, age 72, unknown 241.7
2699 Male, age 18, unknown 236.7
2409 Female, age 72, unknown 233.4
1851 Male, age 51, unknown 233.3
2590 Female, age 75, unknown 233.1
2665 Male, age 74, both hemispheres 229.2
2583 Male, age 75, right hemisphere 226.4
1941 Male, age 53, unknown 222.9
1889 Female, age 72, unknown 222.4
1916 Female, age 42, unknown 214.8
Superior colliculus
nTPM: 217.5
2587 Male, age 74, left hemisphere 245.3
1995 Male, age 72, unknown 227.9
1913 Female, age 42, unknown 224.4
1839 Male, age 51, unknown 216.9
2664 Male, age 75, both hemispheres 216.6
2261 Male, age 18, unknown 215.4
2668 Female, age 75, unknown 211.0
1796 Male, age 53, unknown 207.5
2087 Female, age 72, unknown 205.8
1895 Male, age 76, right hemisphere 204.2
Ventral tegmental area
nTPM: 220.3
2223 Female, age 72, unknown 231.0
1942 Male, age 51, unknown 225.2
2410 Female, age 72, unknown 221.5
2021 Male, age 53, unknown 217.9
1915 Female, age 42, unknown 216.6
2218 Male, age 76, both hemispheres 209.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 326.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 326.4
Samples: 139

Max nTPM: 855.5
Min nTPM: 170.0
Std nTPM: 118.2
Median nTPM: 296.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 855.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 647.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 615.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 599.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 584.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 583.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 582.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 571.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 525.4
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 507.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 503.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 373.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 373.9
FF:10158-103A5 76 years, female 373.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 176.7
Pig sample Sample description nTPM
Midbrain
nTPM: 176.7
Samples: 4

Max nTPM: 292.6
Min nTPM: 113.0
Sample A Female 292.6
Sample B Female 167.6
Sample C Male 133.7
Sample D Male 113.0
Periaqueductal gray
nTPM: 138.6
Samples: 3

Max nTPM: 147.6
Min nTPM: 130.9
Sample B Female 130.9
Sample C Male 147.6
Sample D Male 137.3
Substantia nigra
nTPM: 158.4
Samples: 4

Max nTPM: 182.1
Min nTPM: 140.2
Sample A Female 182.1
Sample B Female 140.2
Sample C Male 154.3
Sample D Male 157.1
Superior colliculi
nTPM: 146.2
Samples: 4

Max nTPM: 154.4
Min nTPM: 131.0
Sample A Female 150.3
Sample B Female 131.0
Sample C Male 154.4
Sample D Male 148.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 202.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 202.1
Samples: 4

Max nTPM: 208.1
Min nTPM: 199.2
Sample A Male 200.7
Sample B Male 208.1
Sample C Female 199.2
Sample D Female 200.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
75198178 Antisense, RP_060502_02_B04, Mouse strain C57BL/6J (56 days, male) 0.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.