BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:32.5 nTPM
HPA:32.5 nTPM
GTEx:23.7 nTPM
FANTOM5:42.9 Scaled Tags Per Million
Pig:13.0 nTPM
Mouse:31.7 nTPM
Allen mouse:2.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 32.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.1
2481 Female, age 94, left hemisphere 11.0
2290 Female, age 72, unknown 3.9
1854 Male, age 80, left hemisphere 1.1
2289 Male, age 61, right hemisphere 0.5
1781 Male, age 74, unknown 0.2
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 32.5
2645 Female, age 72, unknown 51.4
2198 Male, age 80, both hemispheres 46.2
2284 Female, age 91, both hemispheres 42.1
2568 Male, age 61, both hemispheres 40.3
1956 Male, age 74, unknown 29.0
2196 Female, age 79, unknown 25.4
2491 Male, age 75, both hemispheres 24.5
2292 Female, age 85, both hemispheres 19.4
2392 Female, age 94, both hemispheres 14.6
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.3
1806 Female, age 85, left hemisphere 1.5
2286 Male, age 75, left hemisphere 1.4
1783 Male, age 74, unknown 0.0
1856 Female, age 91, right hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 24.2
2775 Male, age 80, right hemisphere 33.0
2195 Female, age 85, both hemispheres 25.8
1979 Male, age 74, unknown 22.5
2029 Male, age 61, right hemisphere 21.4
1812 Female, age 91, both hemispheres 18.5
Olfactory tubercle
nTPM: 28.8
1998 Female, age 91, both hemispheres 49.7
2487 Female, age 94, left hemisphere 25.5
1846 Male, age 80, right hemisphere 22.3
2856 Male, age 75, right hemisphere 17.8
Putamen
nTPM: 0.0
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
1937 Female, age 91, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 18.3
1960 Male, age 74, unknown 43.4
2031 Female, age 72, unknown 30.0
2009 Female, age 91, both hemispheres 17.3
2629 Female, age 94, right hemisphere 14.7
2059 Female, age 85, both hemispheres 14.6
2199 Male, age 80, right hemisphere 6.9
2394 Male, age 61, left hemisphere 1.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 23.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.7
Samples: 246

Max nTPM: 67.6
Min nTPM: 1.2
Std nTPM: 9.6
Median nTPM: 23.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 67.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 58.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 53.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 53.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 52.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 51.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 48.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 45.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 44.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 41.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 39.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 19.7
Samples: 246

Max nTPM: 55.4
Min nTPM: 3.6
Std nTPM: 7.1
Median nTPM: 19.0
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 55.4
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 45.2
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 45.1
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 44.3
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 41.2
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 35.5
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 34.6
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 33.2
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 32.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 32.3
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 32.0
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Brain - Putamen (basal ganglia)
Average nTPM: 10.2
Samples: 205

Max nTPM: 30.4
Min nTPM: 1.8
Std nTPM: 5.5
Median nTPM: 9.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 30.4
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 26.0
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 25.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 25.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 24.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 24.6
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 23.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 22.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 22.4
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 21.6
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 20.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 23.6
FF:10164-103B2 76 years, female 23.6
Globus pallidus
Scaled Tags Per Million: 1.7
FF:10161-103A8 76 years, female 1.9
FF:10175-103C4 60 years, female 1.5
Nucleus accumbens
Scaled Tags Per Million: 42.9
FF:10037-101F1 23-56 years, mixed 42.9
Putamen
Scaled Tags Per Million: 32.0
FF:10176-103C5 60 years, female 32.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.0
Pig sample Sample description nTPM
Caudate
nTPM: 4.6
Samples: 4

Max nTPM: 4.8
Min nTPM: 4.5
Sample A Female 4.5
Sample B Female 4.8
Sample C Male 4.6
Sample D Male 4.6
Putamen
nTPM: 3.1
Samples: 4

Max nTPM: 5.6
Min nTPM: 1.2
Sample A Female 5.6
Sample B Female 1.2
Sample C Male 2.7
Sample D Male 2.7
Septum
nTPM: 13.0
Samples: 4

Max nTPM: 20.3
Min nTPM: 6.3
Sample A Female 6.3
Sample B Female 9.1
Sample C Male 20.3
Sample D Male 16.3
Ventral pallidum
nTPM: 8.5
Samples: 4

Max nTPM: 21.7
Min nTPM: 3.1
Sample A Female 3.1
Sample B Female 5.0
Sample C Male 21.7
Sample D Male 4.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 31.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 6.7
Samples: 4

Max nTPM: 8.5
Min nTPM: 5.3
Sample A Male 5.3
Sample B Male 5.9
Sample C Female 7.0
Sample D Female 8.5
Septum
nTPM: 31.7
Samples: 4

Max nTPM: 35.2
Min nTPM: 28.3
Sample A Male 30.1
Sample B Male 35.2
Sample C Female 28.3
Sample D Female 33.2
Ventral forebrain
nTPM: 11.3
Samples: 4

Max nTPM: 12.3
Min nTPM: 10.2
Sample A Male 10.2
Sample B Male 12.2
Sample C Female 10.4
Sample D Female 12.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.5
69874126 Antisense, RP_050512_02_F12, Mouse strain C57BL/6J (56 days, male) 2.6
73788105 Antisense, RP_051213_01_A11, Mouse strain C57BL/6J (56 days, male) 2.4
Pallidum
Expression energy: 2.5
73788105 Antisense, RP_051213_01_A11, Mouse strain C57BL/6J (56 days, male) 2.8
69874126 Antisense, RP_050512_02_F12, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.