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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:57.5 nTPM
HPA:57.5 nTPM
GTEx:51.3 nTPM
FANTOM5:151.4 Scaled Tags Per Million
Mouse:257.5 nTPM
Allen mouse:23.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 57.5
Sample id Sample description nTPM
Amygdala
nTPM: 36.2
1987 Female, age 91, left hemisphere 43.2
2814 Male, age 76, right hemisphere 40.7
2517 Female, age 94, left hemisphere 39.3
2514 Male, age 75, right hemisphere 32.3
2695 Female, age 67, right hemisphere 25.4
Basal amygdala
nTPM: 35.9
2243 Female, age 91, right hemisphere 49.8
2110 Male, age 80, left hemisphere 40.7
1955 Male, age 76, both hemispheres 36.4
2685 Female, age 94, left hemisphere 35.9
2609 Male, age 75, right hemisphere 30.9
2827 Female, age 67, right hemisphere 21.6
Central amygdala
nTPM: 37.8
2701 Female, age 91, right hemisphere 46.4
2239 Male, age 80, left hemisphere 42.9
1905 Male, age 76, both hemispheres 35.4
2515 Male, age 75, right hemisphere 33.9
2826 Female, age 94, left hemisphere 30.3
Corticomedial amygdala
nTPM: 39.8
2829 Male, age 80, left hemisphere 50.1
2242 Female, age 91, right hemisphere 49.4
2240 Male, age 76, both hemispheres 40.2
2429 Female, age 94, left hemisphere 36.8
2535 Female, age 67, right hemisphere 31.8
2428 Male, age 75, right hemisphere 30.5
Lateral amygdala
nTPM: 30.7
2255 Female, age 91, right hemisphere 37.8
1883 Male, age 76, both hemispheres 37.2
2534 Female, age 94, left hemisphere 33.9
2516 Male, age 75, right hemisphere 29.2
2256 Male, age 80, left hemisphere 28.4
2830 Female, age 67, right hemisphere 17.6
Stria terminalis, bed nucleus
nTPM: 57.5
1974 Female, age 91, both hemispheres 70.9
2201 Male, age 74, unknown 52.3
2486 Female, age 94, both hemispheres 49.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 51.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 51.3
Samples: 152

Max nTPM: 96.6
Min nTPM: 13.2
Std nTPM: 16.9
Median nTPM: 49.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 96.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 96.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 94.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 88.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 86.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 85.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 83.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 82.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 81.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 81.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 80.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 80.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 80.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 79.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 78.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 74.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 73.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 72.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 71.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 70.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 70.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 69.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 69.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 68.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 67.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 67.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 67.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 67.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 66.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 66.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 66.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 65.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 64.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 64.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 63.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 63.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 63.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 63.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 63.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 62.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 61.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 61.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 60.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 59.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 59.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 59.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 59.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 59.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 57.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 57.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 56.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 55.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 55.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 55.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 55.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 54.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 54.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 54.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 53.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 53.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 53.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 53.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 53.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 53.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 52.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 52.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 52.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 51.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 51.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 51.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 51.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 50.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 50.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 50.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 50.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 50.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 49.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 49.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 49.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 47.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 47.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 47.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 47.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 47.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 47.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 47.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 46.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 46.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 46.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 46.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 46.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 45.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 45.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 44.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 44.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 44.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 43.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 43.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 43.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 42.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 42.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 42.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 42.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 41.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 41.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 41.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 41.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 41.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 41.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 40.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 40.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 40.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 40.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 39.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 38.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 38.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 38.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 37.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 37.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 37.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 37.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 36.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 36.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 35.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 35.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 34.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 33.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 33.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 33.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 32.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 32.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 32.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 32.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 32.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 31.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 31.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 31.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 30.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 29.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 29.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 29.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 29.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 28.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 27.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 26.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 24.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 24.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 24.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 22.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 22.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 21.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 13.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 151.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 151.4
FF:10151-102I7 76 years, female 151.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 257.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 257.5
Samples: 4

Max nTPM: 284.7
Min nTPM: 244.7
Sample A Male 284.7
Sample B Male 244.7
Sample C Female 246.5
Sample D Female 254.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 23.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 23.0
67936212 Antisense, RP_040407_01_E10, Mouse strain C57BL/6J (56 days, male) 25.1
71665000 Antisense, RP_050927_04_G11, Mouse strain C57BL/6J (56 days, male) 20.9

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