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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:519.9 nTPM
HPA:519.9 nTPM
FANTOM5:1798.6 Scaled Tags Per Million

PONS - Annotated protein expression
Pending normal tissue analysis

PONS - HPA Brain RNA-seq
Max nTPM 519.9
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 434.5
1984 Male, age 76, both hemispheres 462.6
2301 Female, age 85, both hemispheres 439.7
2188 Female, age 91, both hemispheres 424.7
2090 Male, age 80, both hemispheres 411.0
Dorsal cochlear nucleus
nTPM: 482.8
2058 Male, age 76, both hemispheres 511.8
2802 Male, age 74, right hemisphere 509.2
2370 Male, age 61, both hemispheres 495.1
2187 Female, age 91, both hemispheres 454.9
2378 Male, age 80, both hemispheres 443.2
Dorsal tegmental nucleus
nTPM: 476.5
1936 Male, age 76, left hemisphere 508.6
2083 Male, age 80, both hemispheres 501.4
2326 Male, age 74, both hemispheres 471.9
2358 Male, age 61, both hemispheres 424.1
Dorsolateral tegmental area
nTPM: 462.8
2654 Male, age 80, both hemispheres 508.7
2141 Male, age 76, both hemispheres 481.8
2360 Male, age 74, both hemispheres 476.7
2751 Female, age 85, both hemispheres 457.8
2337 Male, age 61, both hemispheres 389.0
Kolliker-Fuse nucleus
nTPM: 519.9
2315 Male, age 76, right hemisphere 623.4
2163 Male, age 80, both hemispheres 534.6
2793 Female, age 91, left hemisphere 401.8
Lateral lemniscal nuclei
nTPM: 423.8
2036 Male, age 80, both hemispheres 469.0
2169 Male, age 76, both hemispheres 421.5
2453 Male, age 74, right hemisphere 415.6
2746 Female, age 85, left hemisphere 409.3
2320 Female, age 91, left hemisphere 403.7
Lateral parabrachial nucleus
nTPM: 443.1
2792 Male, age 76, both hemispheres 542.7
2139 Female, age 85, right hemisphere 429.7
2013 Male, age 80, both hemispheres 409.6
2790 Male, age 61, both hemispheres 390.4
Lateral vestibular nucleus
nTPM: 456.8
2184 Male, age 76, both hemispheres 473.5
2311 Male, age 80, both hemispheres 440.2
Locus coeruleus
nTPM: 518.1
2317 Female, age 72, unknown 666.6
2014 Male, age 55, unknown 641.4
1980 Male, age 76, both hemispheres 501.5
2123 Female, age 91, both hemispheres 493.6
2788 Male, age 74, unknown 449.5
2720 Male, age 74, both hemispheres 446.2
2162 Male, age 80, both hemispheres 427.9
Medial olivary nucleus
nTPM: 494.8
2138 Female, age 91, both hemispheres 601.2
1962 Male, age 76, both hemispheres 545.2
2851 Male, age 80, both hemispheres 419.5
1943 Male, age 61, both hemispheres 413.1
Medial parabrachial nucleus
nTPM: 453.7
2786 Male, age 76, both hemispheres 476.0
2170 Female, age 91, both hemispheres 470.7
2156 Male, age 61, both hemispheres 449.1
2463 Female, age 85, right hemisphere 436.6
2854 Male, age 80, both hemispheres 436.2
Medial periolivary nuclei
nTPM: 424.1
2063 Male, age 76, both hemispheres 436.2
2791 Male, age 74, right hemisphere 435.8
2081 Male, age 80, both hemispheres 433.7
2458 Female, age 91, both hemispheres 413.6
2171 Female, age 85, both hemispheres 401.4
Motor facial nucleus
nTPM: 429.5
2795 Female, age 91, both hemispheres 458.1
2126 Male, age 61, both hemispheres 449.1
2062 Male, age 76, both hemispheres 445.6
2327 Male, age 80, both hemispheres 429.4
2365 Male, age 74, right hemisphere 418.9
2697 Female, age 85, both hemispheres 376.0
Motor trigeminal nucleus
nTPM: 439.4
2309 Male, age 76, both hemispheres 494.8
2079 Male, age 80, both hemispheres 445.5
2335 Male, age 61, both hemispheres 442.5
2321 Female, age 91, both hemispheres 407.7
2560 Male, age 74, both hemispheres 406.5
Nuclei of the trapezoid body
nTPM: 434.4
1983 Male, age 76, both hemispheres 468.8
2368 Female, age 91, both hemispheres 442.2
2166 Male, age 80, both hemispheres 424.3
2735 Female, age 85, both hemispheres 422.6
2159 Male, age 61, both hemispheres 414.3
Paramedian reticular nucleus
nTPM: 448.5
2052 Male, age 76, both hemispheres 484.6
2057 Male, age 80, both hemispheres 450.3
2313 Male, age 61, both hemispheres 445.2
2050 Female, age 85, both hemispheres 413.8
Pontine nuclei
nTPM: 412.5
2727 Male, age 61, right hemisphere 449.4
1968 Male, age 76, left hemisphere 418.9
2319 Female, age 91, both hemispheres 417.9
2115 Male, age 80, left hemisphere 415.2
2787 Female, age 85, both hemispheres 405.5
1863 Male, age 55, unknown 403.4
2109 Female, age 72, unknown 398.4
2454 Male, age 74, left hemisphere 391.3
Pontine raphe nucleus
nTPM: 449.2
2853 Male, age 76, midline 468.2
2122 Female, age 85, midline 430.3
Posteroventral cochlear nucleus
nTPM: 460.2
2371 Male, age 61, both hemispheres 493.6
2752 Female, age 85, both hemispheres 487.5
2070 Male, age 76, both hemispheres 452.3
2135 Female, age 91, both hemispheres 443.2
2341 Male, age 80, both hemispheres 424.6
Principal sensory trigeminal nucleus
nTPM: 440.7
2324 Male, age 76, both hemispheres 506.4
2008 Male, age 80, left hemisphere 436.0
2158 Male, age 61, both hemispheres 424.4
2367 Female, age 91, left hemisphere 396.1
Reticular pontine nucleus, caudal
nTPM: 435.7
2332 Male, age 80, right hemisphere 477.8
2092 Male, age 76, both hemispheres 445.3
2457 Female, age 91, both hemispheres 414.6
2559 Male, age 74, both hemispheres 405.0
Reticular pontine nucleus, oral
nTPM: 440.1
1939 Male, age 80, both hemispheres 519.7
2167 Male, age 76, both hemispheres 458.1
2012 Female, age 85, both hemispheres 419.3
2366 Female, age 91, both hemispheres 406.0
2361 Male, age 74, both hemispheres 397.2
Reticulotegmental nucleus
nTPM: 476.2
2333 Male, age 80, both hemispheres 521.4
2322 Female, age 91, both hemispheres 472.2
2325 Male, age 76, both hemispheres 471.6
2452 Male, age 74, both hemispheres 439.5
Spinal trigeminal nucleus, oral
nTPM: 469.3
2737 Female, age 85, both hemispheres 493.9
2164 Male, age 80, both hemispheres 465.4
1978 Male, age 76, both hemispheres 448.7
Subcoeruleus area
nTPM: 457.0
2323 Female, age 91, left hemisphere 494.2
2451 Male, age 74, both hemispheres 479.3
1958 Male, age 80, both hemispheres 460.9
2369 Female, age 85, left hemisphere 434.2
2089 Male, age 76, left hemisphere 416.3
Superior olive
nTPM: 415.7
2020 Male, age 76, both hemispheres 432.7
2364 Male, age 74, right hemisphere 428.4
2329 Male, age 80, right hemisphere 422.2
2561 Female, age 91, both hemispheres 406.1
1875 Female, age 85, both hemispheres 388.9
Superior vestibular nucleus
nTPM: 515.3
2061 Male, age 76, both hemispheres 585.2
2383 Male, age 74, both hemispheres 497.5
2015 Male, age 80, both hemispheres 463.3
Ventral periolivary nuclei
nTPM: 422.0
2023 Male, age 76, both hemispheres 443.4
2165 Male, age 80, both hemispheres 428.2
2130 Female, age 85, both hemispheres 414.8
2794 Female, age 91, left hemisphere 401.5
Ventrolateral tegmental area, A5 NE cell group
nTPM: 424.9
2359 Male, age 61, both hemispheres 438.2
1959 Male, age 76, both hemispheres 432.2
2456 Female, age 91, both hemispheres 430.3
2161 Male, age 80, both hemispheres 426.1
2840 Female, age 85, both hemispheres 412.8
2449 Male, age 74, both hemispheres 409.8

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1798.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 1798.6
FF:10182-103D2 60 years, female 2526.0
FF:10165-103B3 76 years, female 1071.3
Pons
Scaled Tags Per Million: 203.4
FF:10033-101E6 18-54 years, mixed 203.4

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