MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:537.0 nTPM
HPA:537.0 nTPM
GTEx:866.0 nTPM
FANTOM5:561.4 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 537.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 471.9
2019 Male, age 18, unknown 623.0
2586 Male, age 75, left hemisphere 567.1
2828 Female, age 72, unknown 478.5
1833 Male, age 53, unknown 460.6
1830 Male, age 51, unknown 449.7
2411 Female, age 72, unknown 444.1
1827 Male, age 72, unknown 443.6
1870 Female, age 42, unknown 442.0
2666 Male, age 74, left hemisphere 421.1
2219 Male, age 76, both hemispheres 389.4
Dorsal raphe nucleus
nTPM: 494.2
1828 Male, age 53, unknown 548.5
2047 Male, age 72, unknown 511.9
2016 Female, age 72, unknown 491.6
2750 Male, age 76, both hemispheres 466.7
2298 Female, age 72, unknown 452.0
Inferior colliculus
nTPM: 454.3
1848 Female, age 42, unknown 471.6
2097 Female, age 72, unknown 463.0
1890 Male, age 53, unknown 443.8
2849 Male, age 72, unknown 438.9
Median raphe nucleus
nTPM: 482.9
2220 Male, age 76, midline 482.9
Pedunculopontine tegmental nucleus
nTPM: 455.4
2334 Male, age 80, both hemispheres 508.5
1921 Female, age 85, both hemispheres 452.1
2338 Male, age 61, both hemispheres 405.6
Periaquaductal grey, anterior
nTPM: 462.5
2502 Female, age 75, unknown 505.5
1795 Male, age 51, unknown 462.9
1947 Male, age 18, unknown 419.0
Periaquaductal grey, dorsal
nTPM: 461.3
2850 Male, age 76, both hemispheres 542.5
2464 Female, age 72, unknown 463.7
1840 Male, age 53, unknown 430.6
1831 Male, age 72, unknown 408.3
Periaquaductal grey, lateral
nTPM: 482.7
2140 Male, age 76, both hemispheres 536.7
2272 Male, age 74, both hemispheres 474.2
2053 Male, age 18, unknown 437.3
Pretectal area
nTPM: 472.2
2273 Male, age 74, both hemispheres 531.6
2316 Male, age 76, right hemisphere 507.9
1817 Female, age 42, unknown 504.4
2667 Female, age 75, unknown 485.7
1944 Female, age 72, unknown 485.4
1816 Male, age 51, unknown 472.3
2007 Male, age 72, unknown 464.4
2224 Female, age 72, unknown 458.1
1815 Male, age 53, unknown 443.3
2407 Male, age 75, both hemispheres 422.5
2825 Male, age 18, unknown 418.0
Red nucleus
nTPM: 510.8
1821 Female, age 72, unknown 579.2
2503 Female, age 72, unknown 557.0
2227 Male, age 72, unknown 550.5
2769 Male, age 72, unknown 531.4
2785 Male, age 18, unknown 530.8
1954 Female, age 42, unknown 527.4
2725 Female, age 75, unknown 497.6
2823 Male, age 76, right hemisphere 489.7
1865 Male, age 51, unknown 480.3
1904 Male, age 53, unknown 478.8
2588 Male, age 74, left hemisphere 467.5
2584 Male, age 75, left hemisphere 440.0
Substantia nigra
nTPM: 537.0
1916 Female, age 42, unknown 616.3
2699 Male, age 18, unknown 609.6
1851 Male, age 51, unknown 595.4
2241 Male, age 72, unknown 574.6
2409 Female, age 72, unknown 562.9
2590 Female, age 75, unknown 529.4
1889 Female, age 72, unknown 484.4
2665 Male, age 74, both hemispheres 482.8
1941 Male, age 53, unknown 467.0
2583 Male, age 75, right hemisphere 447.8
Superior colliculus
nTPM: 453.6
1796 Male, age 53, unknown 520.7
2664 Male, age 75, both hemispheres 483.4
1839 Male, age 51, unknown 470.3
2087 Female, age 72, unknown 462.6
2587 Male, age 74, left hemisphere 460.1
1995 Male, age 72, unknown 452.9
1913 Female, age 42, unknown 431.9
2261 Male, age 18, unknown 428.7
1895 Male, age 76, right hemisphere 415.0
2668 Female, age 75, unknown 410.2
Ventral tegmental area
nTPM: 505.0
2021 Male, age 53, unknown 547.0
2410 Female, age 72, unknown 529.0
1915 Female, age 42, unknown 523.8
2218 Male, age 76, both hemispheres 500.1
2223 Female, age 72, unknown 470.5
1942 Male, age 51, unknown 459.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 866.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 866.0
Samples: 139

Max nTPM: 3558.8
Min nTPM: 54.0
Std nTPM: 726.6
Median nTPM: 666.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 3558.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 3493.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 3491.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 3046.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 2981.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 2425.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2382.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 2321.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 2314.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 2203.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 2125.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 561.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 561.4
FF:10158-103A5 76 years, female 561.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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