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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:22.1 nTPM
HPA:22.1 nTPM
GTEx:20.6 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 22.1
Sample id Sample description nTPM
Amygdala
nTPM: 11.5
1987 Female, age 91, left hemisphere 20.7
2514 Male, age 75, right hemisphere 15.9
2517 Female, age 94, left hemisphere 7.9
2695 Female, age 67, right hemisphere 7.0
2814 Male, age 76, right hemisphere 6.2
Basal amygdala
nTPM: 11.9
2609 Male, age 75, right hemisphere 16.8
2685 Female, age 94, left hemisphere 16.4
2243 Female, age 91, right hemisphere 13.4
2110 Male, age 80, left hemisphere 10.0
1955 Male, age 76, both hemispheres 7.7
2827 Female, age 67, right hemisphere 7.5
Central amygdala
nTPM: 16.9
2701 Female, age 91, right hemisphere 24.3
2239 Male, age 80, left hemisphere 18.9
2515 Male, age 75, right hemisphere 18.6
2826 Female, age 94, left hemisphere 13.1
1905 Male, age 76, both hemispheres 9.8
Corticomedial amygdala
nTPM: 14.3
2242 Female, age 91, right hemisphere 23.0
2829 Male, age 80, left hemisphere 16.8
2535 Female, age 67, right hemisphere 13.5
2428 Male, age 75, right hemisphere 13.4
2429 Female, age 94, left hemisphere 11.5
2240 Male, age 76, both hemispheres 7.7
Lateral amygdala
nTPM: 9.6
2255 Female, age 91, right hemisphere 16.7
2516 Male, age 75, right hemisphere 9.9
2256 Male, age 80, left hemisphere 9.6
1883 Male, age 76, both hemispheres 8.7
2534 Female, age 94, left hemisphere 7.2
2830 Female, age 67, right hemisphere 5.9
Stria terminalis, bed nucleus
nTPM: 22.1
2201 Male, age 74, unknown 26.7
1974 Female, age 91, both hemispheres 20.7
2486 Female, age 94, both hemispheres 18.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 20.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 20.6
Samples: 152

Max nTPM: 49.9
Min nTPM: 0.0
Std nTPM: 10.2
Median nTPM: 19.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 49.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 42.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 42.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 42.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 40.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 39.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 39.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 38.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 38.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 37.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 37.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 36.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 36.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 36.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 35.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 34.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 33.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 33.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 33.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 33.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 33.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 33.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 32.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 32.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 32.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 32.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 31.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 31.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 30.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 30.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 30.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 30.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 29.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 29.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 29.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 28.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 28.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 27.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 27.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 27.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 26.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 25.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 25.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 25.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 24.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 24.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 24.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 24.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 24.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 24.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 24.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 24.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 23.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 23.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 23.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 22.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 22.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 22.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 21.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 21.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 21.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 21.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 21.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 21.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 21.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 21.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 20.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 20.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 20.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 20.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 20.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 20.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 20.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 20.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 20.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 19.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 19.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 19.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 19.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 19.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 19.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 19.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 19.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 18.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 18.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 18.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 18.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 18.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 17.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 17.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 17.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 17.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 17.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 17.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 17.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 16.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 16.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 16.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 16.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 15.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 15.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 15.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 14.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 14.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 14.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 14.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 14.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 13.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 13.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 13.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 13.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 13.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 13.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 12.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 12.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 12.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 12.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 12.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 12.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 12.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 12.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 11.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 11.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 11.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 11.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 10.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 10.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 10.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 10.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 10.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 10.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 8.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 8.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 8.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 8.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 8.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 7.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 7.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 7.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 7.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 6.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 6.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 6.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 5.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 4.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 3.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 0.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 0.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 0.0
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