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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:21.4 nTPM
HPA:21.4 nTPM
GTEx:21.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 21.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 11.6
2816 Male, age 47, midline 13.5
2194 Female, age 79, both hemispheres 12.7
1981 Female, age 72, midline 11.8
2565 Male, age 75, midline 11.4
2048 Male, age 55, midline 8.4
Cervical spinal cord, dorsal horn
nTPM: 21.4
2296 Male, age 66, both hemispheres 28.5
2069 Male, age 47, both hemispheres 25.6
1877 Male, age 55, unknown 21.6
2721 Male, age 90, both hemispheres 21.0
2297 Male, age 75, both hemispheres 19.2
2173 Female, age 72, unknown 12.2
Cervical spinal cord, ventral horn
nTPM: 9.0
2480 Male, age 75, both hemispheres 12.5
2098 Female, age 72, unknown 11.1
2068 Male, age 55, unknown 10.9
2295 Male, age 66, both hemispheres 7.3
2809 Male, age 90, both hemispheres 7.0
2820 Female, age 79, both hemispheres 5.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 21.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 21.3
Samples: 159

Max nTPM: 55.2
Min nTPM: 5.1
Std nTPM: 9.2
Median nTPM: 20.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 55.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 52.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 51.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 46.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 40.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 38.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 38.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 38.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 37.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 37.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 35.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 34.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 33.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 33.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 32.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 32.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 32.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 32.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 31.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 30.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 30.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 30.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 29.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 29.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 29.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 29.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 29.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 28.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 28.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 28.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 28.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 28.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 28.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 28.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 28.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 28.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 27.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 27.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 27.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 27.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 27.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 26.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 26.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 26.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 26.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 26.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 26.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 26.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 25.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 24.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 24.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 24.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 24.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 24.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 24.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 24.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 23.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 23.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 23.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 23.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 23.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 23.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 22.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 22.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 22.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 22.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 22.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 21.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 21.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 21.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 21.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 21.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 21.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 21.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 21.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 21.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 21.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 21.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 21.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 20.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 20.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 20.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 20.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 20.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 19.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 19.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 19.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 19.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 19.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 18.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 18.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 18.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 17.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 17.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 17.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 17.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 17.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 17.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 16.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 16.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 16.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 16.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 16.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 16.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 16.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 16.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 16.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 15.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 15.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 15.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 15.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 15.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 15.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 15.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 15.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 14.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 14.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 14.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 14.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 14.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 14.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 14.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 13.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 13.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 13.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 13.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 13.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 13.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 13.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 13.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 13.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 13.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 13.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 12.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 12.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 12.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 12.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 12.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 11.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 11.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 11.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 11.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 10.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 10.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 10.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 10.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 9.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 9.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 8.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 8.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 8.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 8.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 8.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 7.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 7.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 7.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 6.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 5.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 5.1
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The Human Protein Atlas project is funded
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