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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:119.1 nTPM
HPA:119.1 nTPM
GTEx:335.9 nTPM
FANTOM5:158.6 Scaled Tags Per Million
Pig:103.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 119.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 95.5
1981 Female, age 72, midline 107.1
2816 Male, age 47, midline 103.7
2194 Female, age 79, both hemispheres 97.2
2048 Male, age 55, midline 88.3
2565 Male, age 75, midline 80.9
Cervical spinal cord, dorsal horn
nTPM: 107.6
2296 Male, age 66, both hemispheres 182.0
2173 Female, age 72, unknown 156.9
2069 Male, age 47, both hemispheres 97.2
1877 Male, age 55, unknown 84.9
2297 Male, age 75, both hemispheres 64.2
2721 Male, age 90, both hemispheres 60.1
Cervical spinal cord, ventral horn
nTPM: 119.1
2820 Female, age 79, both hemispheres 127.8
2068 Male, age 55, unknown 126.8
2480 Male, age 75, both hemispheres 125.2
2098 Female, age 72, unknown 120.9
2295 Male, age 66, both hemispheres 111.5
2809 Male, age 90, both hemispheres 102.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 335.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 335.9
Samples: 159

Max nTPM: 907.6
Min nTPM: 52.6
Std nTPM: 161.7
Median nTPM: 307.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 907.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 832.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 749.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 709.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 701.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 681.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 638.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 635.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 630.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 603.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 585.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 576.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 567.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 564.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 554.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 552.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 541.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 535.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 532.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 527.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 526.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 513.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 508.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 508.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 503.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 500.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 496.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 495.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 493.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 489.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 481.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 469.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 463.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 458.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 453.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 450.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 449.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 448.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 445.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 438.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 433.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 432.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 425.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 420.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 416.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 412.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 410.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 410.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 409.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 402.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 399.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 392.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 388.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 382.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 381.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 381.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 380.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 380.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 380.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 379.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 378.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 372.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 368.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 367.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 362.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 361.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 359.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 354.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 353.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 349.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 344.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 343.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 343.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 329.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 329.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 323.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 320.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 319.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 316.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 307.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 305.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 303.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 299.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 297.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 294.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 294.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 294.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 288.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 285.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 284.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 281.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 280.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 278.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 274.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 273.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 269.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 265.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 259.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 258.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 256.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 256.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 253.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 252.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 250.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 248.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 245.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 244.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 240.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 238.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 236.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 234.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 233.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 226.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 225.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 224.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 223.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 222.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 220.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 219.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 218.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 215.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 208.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 206.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 205.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 200.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 199.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 199.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 196.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 196.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 191.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 190.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 188.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 185.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 181.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 179.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 177.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 172.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 171.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 158.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 158.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 156.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 151.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 150.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 144.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 134.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 133.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 127.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 126.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 122.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 121.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 115.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 113.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 105.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 95.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 79.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 70.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 64.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 59.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 52.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 158.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 158.6
FF:10181-103D1 60 years, female 218.6
FF:10159-103A6 76 years, female 98.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 103.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 82.5
Samples: 4

Max nTPM: 105.7
Min nTPM: 65.7
Sample A Female 105.7
Sample B Female 78.5
Sample C Male 65.7
Sample D Male 79.9
Ventral spinal cord
nTPM: 103.0
Samples: 4

Max nTPM: 131.2
Min nTPM: 83.3
Sample A Female 131.2
Sample B Female 83.3
Sample C Male 90.8
Sample D Male 106.7

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