BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:55.3 nTPM
HPA:55.3 nTPM
GTEx:25.4 nTPM
FANTOM5:221.1 Scaled Tags Per Million
Mouse:42.3 nTPM
Allen mouse:1.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA055907Antibody CAB011507
Glial cells HighHigh
Neuronal cells Not detectedHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 55.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 55.2
2481 Female, age 94, left hemisphere 76.7
2290 Female, age 72, unknown 65.3
2288 Male, age 75, left hemisphere 63.0
1781 Male, age 74, unknown 58.2
1857 Female, age 85, left hemisphere 51.1
1854 Male, age 80, left hemisphere 46.8
2846 Female, age 79, unknown 43.7
2289 Male, age 61, right hemisphere 36.4
Claustrum
nTPM: 33.5
2198 Male, age 80, both hemispheres 43.9
2196 Female, age 79, unknown 39.5
1956 Male, age 74, unknown 39.1
2491 Male, age 75, both hemispheres 36.7
2292 Female, age 85, both hemispheres 31.1
2568 Male, age 61, both hemispheres 30.1
2284 Female, age 91, both hemispheres 29.2
2645 Female, age 72, unknown 26.3
2392 Female, age 94, both hemispheres 25.7
Globus pallidus, externus
nTPM: 45.0
2772 Female, age 79, unknown 58.6
1996 Male, age 80, right hemisphere 56.7
2646 Male, age 61, right hemisphere 45.9
2395 Male, age 75, both hemispheres 39.2
2567 Female, age 72, unknown 24.7
Globus pallidus, internus
nTPM: 50.1
2287 Male, age 75, right hemisphere 62.4
2483 Female, age 94, right hemisphere 59.4
2037 Male, age 80, right hemisphere 54.0
1818 Male, age 74, unknown 53.1
2778 Female, age 91, both hemispheres 51.6
2111 Female, age 85, right hemisphere 40.7
2566 Female, age 72, unknown 29.5
Nucleus accumbens
nTPM: 47.3
2286 Male, age 75, left hemisphere 62.0
1806 Female, age 85, left hemisphere 50.2
2732 Male, age 80, right hemisphere 49.4
2698 Female, age 72, unknown 48.1
2824 Male, age 61, right hemisphere 46.3
1783 Male, age 74, unknown 46.0
1856 Female, age 91, right hemisphere 38.3
2391 Female, age 94, left hemisphere 37.6
Nucleus basalis of Meynert
nTPM: 41.1
2569 Male, age 61, both hemispheres 46.2
2821 Male, age 75, both hemispheres 43.4
2484 Female, age 94, left hemisphere 37.6
2393 Male, age 80, right hemisphere 37.5
Nucleus of the diagonal band
nTPM: 50.8
1979 Male, age 74, unknown 59.8
2775 Male, age 80, right hemisphere 49.2
2029 Male, age 61, right hemisphere 48.9
2195 Female, age 85, both hemispheres 48.7
1812 Female, age 91, both hemispheres 47.2
Olfactory tubercle
nTPM: 51.3
1846 Male, age 80, right hemisphere 61.6
2487 Female, age 94, left hemisphere 53.8
2856 Male, age 75, right hemisphere 53.2
1998 Female, age 91, both hemispheres 36.7
Putamen
nTPM: 39.3
2482 Female, age 94, left hemisphere 54.0
2466 Female, age 79, unknown 43.7
1838 Male, age 80, right hemisphere 41.2
1937 Female, age 91, right hemisphere 39.0
2489 Female, age 72, unknown 36.4
2647 Male, age 75, left hemisphere 34.3
1829 Male, age 74, unknown 26.9
Septal nuclei
nTPM: 55.3
2199 Male, age 80, right hemisphere 67.9
2059 Female, age 85, both hemispheres 64.7
2031 Female, age 72, unknown 55.7
1960 Male, age 74, unknown 54.8
2009 Female, age 91, both hemispheres 52.4
2629 Female, age 94, right hemisphere 50.1
2394 Male, age 61, left hemisphere 41.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 23.5
Samples: 246

Max nTPM: 103.4
Min nTPM: 3.9
Std nTPM: 16.3
Median nTPM: 18.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 103.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 95.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 88.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 88.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 75.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 70.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 68.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 66.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 65.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 64.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 60.2
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 19.8
Samples: 246

Max nTPM: 104.2
Min nTPM: 3.7
Std nTPM: 15.1
Median nTPM: 15.2
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 104.2
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 82.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 78.0
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 68.9
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 65.6
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 61.9
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 61.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 57.6
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 55.5
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 55.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 54.0
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 25.4
Samples: 205

Max nTPM: 136.2
Min nTPM: 3.7
Std nTPM: 18.5
Median nTPM: 19.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 136.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 109.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 85.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 82.9
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 75.9
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 74.5
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 73.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 73.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 73.0
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 65.7
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 63.1
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 221.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 221.1
FF:10164-103B2 76 years, female 221.1
Globus pallidus
Scaled Tags Per Million: 142.6
FF:10175-103C4 60 years, female 163.3
FF:10161-103A8 76 years, female 121.9
Nucleus accumbens
Scaled Tags Per Million: 117.8
FF:10037-101F1 23-56 years, mixed 117.8
Putamen
Scaled Tags Per Million: 141.3
FF:10176-103C5 60 years, female 141.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 42.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 42.3
Samples: 4

Max nTPM: 46.9
Min nTPM: 39.1
Sample A Male 43.9
Sample B Male 46.9
Sample C Female 39.1
Sample D Female 39.3
Septum
nTPM: 35.0
Samples: 4

Max nTPM: 41.1
Min nTPM: 29.6
Sample A Male 29.6
Sample B Male 32.0
Sample C Female 41.1
Sample D Female 37.2
Ventral forebrain
nTPM: 26.5
Samples: 4

Max nTPM: 36.2
Min nTPM: 21.5
Sample A Male 21.5
Sample B Male 22.5
Sample C Female 36.2
Sample D Female 25.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.4
69735030 Antisense, RP_050503_01_H09, Mouse strain C57BL/6J (56 days, male) 1.4
Pallidum
Expression energy: 0.5
69735030 Antisense, RP_050503_01_H09, Mouse strain C57BL/6J (56 days, male) 0.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.