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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:88.3 nTPM
HPA:88.3 nTPM
GTEx:84.2 nTPM
FANTOM5:163.4 Scaled Tags Per Million
Pig:43.8 nTPM
Mouse:154.2 nTPM
Allen mouse:13.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 88.3
Sample id Sample description nTPM
Amygdala
nTPM: 88.3
2814 Male, age 76, right hemisphere 144.4
2695 Female, age 67, right hemisphere 83.3
1987 Female, age 91, left hemisphere 73.1
2517 Female, age 94, left hemisphere 71.6
2514 Male, age 75, right hemisphere 69.0
Basal amygdala
nTPM: 62.6
1955 Male, age 76, both hemispheres 102.1
2110 Male, age 80, left hemisphere 63.6
2685 Female, age 94, left hemisphere 60.9
2609 Male, age 75, right hemisphere 55.5
2243 Female, age 91, right hemisphere 51.6
2827 Female, age 67, right hemisphere 42.1
Central amygdala
nTPM: 78.4
1905 Male, age 76, both hemispheres 138.6
2515 Male, age 75, right hemisphere 72.7
2239 Male, age 80, left hemisphere 63.1
2701 Female, age 91, right hemisphere 60.6
2826 Female, age 94, left hemisphere 57.0
Corticomedial amygdala
nTPM: 66.0
2240 Male, age 76, both hemispheres 85.9
2429 Female, age 94, left hemisphere 68.2
2829 Male, age 80, left hemisphere 67.7
2242 Female, age 91, right hemisphere 63.8
2428 Male, age 75, right hemisphere 60.3
2535 Female, age 67, right hemisphere 50.3
Lateral amygdala
nTPM: 68.6
1883 Male, age 76, both hemispheres 131.5
2534 Female, age 94, left hemisphere 63.1
2516 Male, age 75, right hemisphere 61.9
2256 Male, age 80, left hemisphere 58.4
2255 Female, age 91, right hemisphere 57.3
2830 Female, age 67, right hemisphere 39.6
Stria terminalis, bed nucleus
nTPM: 63.3
2201 Male, age 74, unknown 77.9
1974 Female, age 91, both hemispheres 58.0
2486 Female, age 94, both hemispheres 53.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 84.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 84.2
Samples: 152

Max nTPM: 156.1
Min nTPM: 8.0
Std nTPM: 19.3
Median nTPM: 82.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 156.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 134.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 132.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 129.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 119.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 118.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 118.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 117.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 117.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 115.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 113.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 113.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 112.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 110.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 108.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 108.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 107.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 106.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 105.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 104.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 103.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 102.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 101.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 100.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 99.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 98.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 97.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 97.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 97.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 97.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 96.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 96.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 96.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 96.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 94.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 94.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 94.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 93.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 93.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 93.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 92.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 92.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 92.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 91.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 91.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 90.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 90.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 90.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 90.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 90.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 90.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 90.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 90.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 89.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 89.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 89.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 89.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 88.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 87.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 87.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 87.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 87.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 87.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 87.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 86.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 86.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 86.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 85.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 85.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 85.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 85.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 84.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 84.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 84.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 82.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 82.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 82.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 82.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 82.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 82.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 82.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 82.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 81.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 81.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 81.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 81.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 81.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 81.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 80.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 80.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 80.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 80.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 79.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 79.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 79.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 79.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 78.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 78.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 78.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 78.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 78.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 78.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 78.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 77.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 77.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 76.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 76.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 76.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 76.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 75.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 75.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 75.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 74.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 73.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 73.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 71.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 71.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 71.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 71.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 71.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 70.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 70.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 70.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 69.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 69.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 69.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 68.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 68.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 67.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 65.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 65.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 65.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 64.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 64.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 63.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 63.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 62.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 61.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 61.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 60.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 59.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 58.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 57.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 56.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 55.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 51.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 50.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 45.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 43.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 42.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 37.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 8.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 163.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 163.4
FF:10151-102I7 76 years, female 163.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 43.8
Pig sample Sample description nTPM
Amygdala
nTPM: 43.8
Samples: 4

Max nTPM: 51.3
Min nTPM: 36.2
Sample A Female 46.2
Sample B Female 36.2
Sample C Male 41.5
Sample D Male 51.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 154.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 154.2
Samples: 4

Max nTPM: 172.6
Min nTPM: 136.8
Sample A Male 172.6
Sample B Male 138.3
Sample C Female 136.8
Sample D Female 168.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 13.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.6
1700 Antisense, RP_040526_02_D07, Mouse strain C57BL/6J (56 days, male) 13.6
1699 Antisense, RP_040526_02_D07, Mouse strain C57BL/6J (56 days, male) 12.3

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