BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:15.3 nTPM
HPA:15.3 nTPM
GTEx:23.9 nTPM
FANTOM5:21.7 Scaled Tags Per Million
Pig:4.9 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.3
2290 Female, age 72, unknown 22.8
1857 Female, age 85, left hemisphere 21.7
1781 Male, age 74, unknown 16.1
2481 Female, age 94, left hemisphere 15.9
2289 Male, age 61, right hemisphere 14.3
1854 Male, age 80, left hemisphere 12.7
2846 Female, age 79, unknown 10.3
2288 Male, age 75, left hemisphere 8.7
Claustrum
nTPM: 6.8
2568 Male, age 61, both hemispheres 9.6
2284 Female, age 91, both hemispheres 9.2
2292 Female, age 85, both hemispheres 8.6
2198 Male, age 80, both hemispheres 8.0
2196 Female, age 79, unknown 6.7
2645 Female, age 72, unknown 6.0
2491 Male, age 75, both hemispheres 5.9
1956 Male, age 74, unknown 3.9
2392 Female, age 94, both hemispheres 2.8
Globus pallidus, externus
nTPM: 2.0
2567 Female, age 72, unknown 3.1
2646 Male, age 61, right hemisphere 3.0
2772 Female, age 79, unknown 2.4
1996 Male, age 80, right hemisphere 1.6
2395 Male, age 75, both hemispheres 0.0
Globus pallidus, internus
nTPM: 2.4
2483 Female, age 94, right hemisphere 11.0
2566 Female, age 72, unknown 4.2
1818 Male, age 74, unknown 0.9
2037 Male, age 80, right hemisphere 0.8
2778 Female, age 91, both hemispheres 0.3
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
Nucleus accumbens
nTPM: 11.9
1806 Female, age 85, left hemisphere 23.9
1783 Male, age 74, unknown 19.9
1856 Female, age 91, right hemisphere 15.8
2824 Male, age 61, right hemisphere 9.4
2698 Female, age 72, unknown 8.7
2732 Male, age 80, right hemisphere 8.1
2286 Male, age 75, left hemisphere 6.4
2391 Female, age 94, left hemisphere 3.1
Nucleus basalis of Meynert
nTPM: 9.5
2484 Female, age 94, left hemisphere 18.9
2569 Male, age 61, both hemispheres 8.9
2393 Male, age 80, right hemisphere 5.9
2821 Male, age 75, both hemispheres 4.3
Nucleus of the diagonal band
nTPM: 6.1
1979 Male, age 74, unknown 12.3
1812 Female, age 91, both hemispheres 6.2
2775 Male, age 80, right hemisphere 5.9
2195 Female, age 85, both hemispheres 3.5
2029 Male, age 61, right hemisphere 2.5
Olfactory tubercle
nTPM: 4.5
1998 Female, age 91, both hemispheres 6.2
2487 Female, age 94, left hemisphere 5.7
1846 Male, age 80, right hemisphere 4.0
2856 Male, age 75, right hemisphere 2.2
Putamen
nTPM: 15.2
2489 Female, age 72, unknown 19.8
1937 Female, age 91, right hemisphere 19.4
1838 Male, age 80, right hemisphere 15.9
2482 Female, age 94, left hemisphere 15.8
2466 Female, age 79, unknown 14.7
1829 Male, age 74, unknown 12.1
2647 Male, age 75, left hemisphere 8.7
Septal nuclei
nTPM: 6.5
2394 Male, age 61, left hemisphere 10.9
2059 Female, age 85, both hemispheres 9.2
2199 Male, age 80, right hemisphere 6.9
1960 Male, age 74, unknown 6.6
2031 Female, age 72, unknown 5.8
2009 Female, age 91, both hemispheres 5.6
2629 Female, age 94, right hemisphere 0.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 23.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.9
Samples: 246

Max nTPM: 79.9
Min nTPM: 2.4
Std nTPM: 13.1
Median nTPM: 19.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 79.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 78.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 60.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 57.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 55.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 54.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 54.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 54.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 49.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 49.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 49.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 20.8
Samples: 246

Max nTPM: 72.8
Min nTPM: 1.0
Std nTPM: 11.2
Median nTPM: 19.5
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 72.8
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 66.1
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 59.9
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 45.9
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 45.7
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 45.6
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 43.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 43.6
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 42.8
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 42.8
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 42.3
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Brain - Putamen (basal ganglia)
Average nTPM: 23.9
Samples: 205

Max nTPM: 53.4
Min nTPM: 2.6
Std nTPM: 11.3
Median nTPM: 22.9
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 53.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 52.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 51.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 50.4
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 49.9
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 49.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 47.2
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 46.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 45.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 45.6
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 45.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 15.4
FF:10164-103B2 76 years, female 15.4
Globus pallidus
Scaled Tags Per Million: 7.2
FF:10161-103A8 76 years, female 8.1
FF:10175-103C4 60 years, female 6.3
Nucleus accumbens
Scaled Tags Per Million: 11.6
FF:10037-101F1 23-56 years, mixed 11.6
Putamen
Scaled Tags Per Million: 21.7
FF:10176-103C5 60 years, female 21.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.9
Pig sample Sample description nTPM
Caudate
nTPM: 4.9
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.9
Sample A Female 3.9
Sample B Female 5.3
Sample C Male 5.0
Sample D Male 5.2
Putamen
nTPM: 3.7
Samples: 4

Max nTPM: 5.2
Min nTPM: 2.8
Sample A Female 2.8
Sample B Female 3.2
Sample C Male 3.5
Sample D Male 5.2
Septum
nTPM: 4.3
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.5
Sample A Female 5.4
Sample B Female 3.9
Sample C Male 4.3
Sample D Male 3.5
Ventral pallidum
nTPM: 4.5
Samples: 4

Max nTPM: 5.0
Min nTPM: 3.8
Sample A Female 4.7
Sample B Female 3.8
Sample C Male 4.4
Sample D Male 5.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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