BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:14.2 nTPM
HPA:14.2 nTPM
GTEx:8.8 nTPM
FANTOM5:23.6 Scaled Tags Per Million
Pig:6.6 nTPM
Mouse:14.4 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA063280
Glial cells Not detected
Neuronal cells Not detected

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.2
2289 Male, age 61, right hemisphere 13.0
1857 Female, age 85, left hemisphere 12.6
2481 Female, age 94, left hemisphere 12.6
2290 Female, age 72, unknown 12.2
1781 Male, age 74, unknown 12.1
1854 Male, age 80, left hemisphere 11.9
2288 Male, age 75, left hemisphere 11.8
2846 Female, age 79, unknown 11.3
Claustrum
nTPM: 13.0
2645 Female, age 72, unknown 14.2
2292 Female, age 85, both hemispheres 13.9
2392 Female, age 94, both hemispheres 13.3
2198 Male, age 80, both hemispheres 13.1
2196 Female, age 79, unknown 13.0
2284 Female, age 91, both hemispheres 12.7
2568 Male, age 61, both hemispheres 12.4
2491 Male, age 75, both hemispheres 12.3
1956 Male, age 74, unknown 11.7
Globus pallidus, externus
nTPM: 14.1
1996 Male, age 80, right hemisphere 15.1
2772 Female, age 79, unknown 14.3
2395 Male, age 75, both hemispheres 14.0
2646 Male, age 61, right hemisphere 13.8
2567 Female, age 72, unknown 13.3
Globus pallidus, internus
nTPM: 14.2
1818 Male, age 74, unknown 15.2
2111 Female, age 85, right hemisphere 15.1
2778 Female, age 91, both hemispheres 14.7
2037 Male, age 80, right hemisphere 14.5
2287 Male, age 75, right hemisphere 14.5
2566 Female, age 72, unknown 12.9
2483 Female, age 94, right hemisphere 12.7
Nucleus accumbens
nTPM: 12.7
2732 Male, age 80, right hemisphere 14.1
2391 Female, age 94, left hemisphere 13.8
1783 Male, age 74, unknown 12.6
1806 Female, age 85, left hemisphere 12.6
2698 Female, age 72, unknown 12.6
2824 Male, age 61, right hemisphere 12.6
2286 Male, age 75, left hemisphere 12.5
1856 Female, age 91, right hemisphere 11.1
Nucleus basalis of Meynert
nTPM: 12.9
2821 Male, age 75, both hemispheres 13.3
2569 Male, age 61, both hemispheres 13.1
2393 Male, age 80, right hemisphere 12.6
2484 Female, age 94, left hemisphere 12.6
Nucleus of the diagonal band
nTPM: 12.7
1979 Male, age 74, unknown 13.0
2195 Female, age 85, both hemispheres 12.9
2029 Male, age 61, right hemisphere 12.7
1812 Female, age 91, both hemispheres 12.6
2775 Male, age 80, right hemisphere 12.5
Olfactory tubercle
nTPM: 12.5
1998 Female, age 91, both hemispheres 13.8
2487 Female, age 94, left hemisphere 12.4
2856 Male, age 75, right hemisphere 12.0
1846 Male, age 80, right hemisphere 11.8
Putamen
nTPM: 12.6
2482 Female, age 94, left hemisphere 13.2
1838 Male, age 80, right hemisphere 12.8
2466 Female, age 79, unknown 12.7
1829 Male, age 74, unknown 12.6
1937 Female, age 91, right hemisphere 12.5
2647 Male, age 75, left hemisphere 12.5
2489 Female, age 72, unknown 12.2
Septal nuclei
nTPM: 12.5
2059 Female, age 85, both hemispheres 13.7
2031 Female, age 72, unknown 12.9
1960 Male, age 74, unknown 12.5
2199 Male, age 80, right hemisphere 12.5
2394 Male, age 61, left hemisphere 12.5
2009 Female, age 91, both hemispheres 12.2
2629 Female, age 94, right hemisphere 11.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.2
Samples: 246

Max nTPM: 15.6
Min nTPM: 3.2
Std nTPM: 1.9
Median nTPM: 8.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 15.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 15.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 14.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 14.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 13.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 13.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 12.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 12.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 12.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 11.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 11.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.7
Samples: 246

Max nTPM: 17.2
Min nTPM: 3.8
Std nTPM: 1.8
Median nTPM: 7.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 17.2
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 13.5
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 13.2
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 13.1
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 13.1
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 12.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 12.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 11.7
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 11.2
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 11.2
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 11.1
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Brain - Putamen (basal ganglia)
Average nTPM: 8.8
Samples: 205

Max nTPM: 16.5
Min nTPM: 2.3
Std nTPM: 2.1
Median nTPM: 8.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 16.5
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 14.7
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 14.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 14.6
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 14.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 13.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 13.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 13.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 13.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 13.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 12.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 23.6
FF:10164-103B2 76 years, female 23.6
Globus pallidus
Scaled Tags Per Million: 20.9
FF:10161-103A8 76 years, female 24.5
FF:10175-103C4 60 years, female 17.3
Nucleus accumbens
Scaled Tags Per Million: 17.8
FF:10037-101F1 23-56 years, mixed 17.8
Putamen
Scaled Tags Per Million: 17.7
FF:10176-103C5 60 years, female 17.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.6
Pig sample Sample description nTPM
Caudate
nTPM: 6.5
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.7
Sample A Female 5.7
Sample B Female 6.8
Sample C Male 6.5
Sample D Male 7.0
Putamen
nTPM: 6.5
Samples: 4

Max nTPM: 6.8
Min nTPM: 5.9
Sample A Female 6.6
Sample B Female 6.5
Sample C Male 5.9
Sample D Male 6.8
Septum
nTPM: 6.6
Samples: 4

Max nTPM: 7.1
Min nTPM: 5.6
Sample A Female 5.6
Sample B Female 7.1
Sample C Male 6.8
Sample D Male 7.0
Ventral pallidum
nTPM: 6.6
Samples: 4

Max nTPM: 7.3
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 6.7
Sample C Male 7.3
Sample D Male 7.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.3
Samples: 4

Max nTPM: 17.6
Min nTPM: 10.4
Sample A Male 17.6
Sample B Male 16.7
Sample C Female 12.3
Sample D Female 10.4
Septum
nTPM: 14.4
Samples: 4

Max nTPM: 16.6
Min nTPM: 11.9
Sample A Male 11.9
Sample B Male 16.6
Sample C Female 15.4
Sample D Female 13.8
Ventral forebrain
nTPM: 11.7
Samples: 4

Max nTPM: 16.6
Min nTPM: 9.2
Sample A Male 9.2
Sample B Male 10.6
Sample C Female 16.6
Sample D Female 10.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68745084 Antisense, RP_050210_01_C02, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.2
68745084 Antisense, RP_050210_01_C02, Mouse strain C57BL/6J (56 days, male) 0.2

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