BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:19.2 nTPM
HPA:19.2 nTPM
GTEx:15.3 nTPM
FANTOM5:43.5 Scaled Tags Per Million
Pig:21.0 nTPM
Mouse:38.3 nTPM
Allen mouse:0.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA005697
Glial cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 19.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.2
2481 Female, age 94, left hemisphere 16.7
2288 Male, age 75, left hemisphere 15.7
2290 Female, age 72, unknown 15.6
1781 Male, age 74, unknown 15.3
1857 Female, age 85, left hemisphere 15.1
2846 Female, age 79, unknown 14.6
1854 Male, age 80, left hemisphere 14.5
2289 Male, age 61, right hemisphere 14.4
Claustrum
nTPM: 17.7
2645 Female, age 72, unknown 20.0
2491 Male, age 75, both hemispheres 18.5
2198 Male, age 80, both hemispheres 18.2
2284 Female, age 91, both hemispheres 18.2
2196 Female, age 79, unknown 17.7
1956 Male, age 74, unknown 17.5
2568 Male, age 61, both hemispheres 16.9
2292 Female, age 85, both hemispheres 16.8
2392 Female, age 94, both hemispheres 15.7
Globus pallidus, externus
nTPM: 17.6
2646 Male, age 61, right hemisphere 19.7
2567 Female, age 72, unknown 18.6
1996 Male, age 80, right hemisphere 17.3
2772 Female, age 79, unknown 16.8
2395 Male, age 75, both hemispheres 15.6
Globus pallidus, internus
nTPM: 16.8
2483 Female, age 94, right hemisphere 23.1
2287 Male, age 75, right hemisphere 18.0
2566 Female, age 72, unknown 17.1
2778 Female, age 91, both hemispheres 15.3
1818 Male, age 74, unknown 15.1
2111 Female, age 85, right hemisphere 14.8
2037 Male, age 80, right hemisphere 14.0
Nucleus accumbens
nTPM: 15.5
1783 Male, age 74, unknown 16.7
2824 Male, age 61, right hemisphere 16.4
2286 Male, age 75, left hemisphere 16.1
1806 Female, age 85, left hemisphere 15.6
2698 Female, age 72, unknown 15.4
2732 Male, age 80, right hemisphere 15.3
1856 Female, age 91, right hemisphere 15.0
2391 Female, age 94, left hemisphere 13.7
Nucleus basalis of Meynert
nTPM: 16.2
2569 Male, age 61, both hemispheres 22.2
2484 Female, age 94, left hemisphere 16.5
2393 Male, age 80, right hemisphere 13.5
2821 Male, age 75, both hemispheres 12.7
Nucleus of the diagonal band
nTPM: 19.2
2775 Male, age 80, right hemisphere 20.9
1979 Male, age 74, unknown 19.7
2195 Female, age 85, both hemispheres 19.2
1812 Female, age 91, both hemispheres 18.9
2029 Male, age 61, right hemisphere 17.3
Olfactory tubercle
nTPM: 18.1
1846 Male, age 80, right hemisphere 19.8
1998 Female, age 91, both hemispheres 18.3
2487 Female, age 94, left hemisphere 17.7
2856 Male, age 75, right hemisphere 16.7
Putamen
nTPM: 16.0
2647 Male, age 75, left hemisphere 21.4
2482 Female, age 94, left hemisphere 17.2
2489 Female, age 72, unknown 15.4
2466 Female, age 79, unknown 15.0
1829 Male, age 74, unknown 14.9
1838 Male, age 80, right hemisphere 14.1
1937 Female, age 91, right hemisphere 13.9
Septal nuclei
nTPM: 18.1
1960 Male, age 74, unknown 22.2
2031 Female, age 72, unknown 20.6
2059 Female, age 85, both hemispheres 18.1
2199 Male, age 80, right hemisphere 16.9
2009 Female, age 91, both hemispheres 16.6
2394 Male, age 61, left hemisphere 16.1
2629 Female, age 94, right hemisphere 16.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 15.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 14.4
Samples: 246

Max nTPM: 28.1
Min nTPM: 8.1
Std nTPM: 2.6
Median nTPM: 14.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 28.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 22.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 22.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 22.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 21.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 20.5
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 20.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 20.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 20.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 19.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 19.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 14.4
Samples: 246

Max nTPM: 24.2
Min nTPM: 6.5
Std nTPM: 3.1
Median nTPM: 14.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 24.2
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 23.2
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 21.8
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 21.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 21.3
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 20.4
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 20.4
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 20.4
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 20.3
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 20.2
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 20.1
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Brain - Putamen (basal ganglia)
Average nTPM: 15.3
Samples: 205

Max nTPM: 29.1
Min nTPM: 7.7
Std nTPM: 3.2
Median nTPM: 15.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 29.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 27.7
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 26.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 24.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 23.7
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 22.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 22.2
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 21.6
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 21.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 20.9
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 20.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 34.8
FF:10164-103B2 76 years, female 34.8
Globus pallidus
Scaled Tags Per Million: 27.6
FF:10175-103C4 60 years, female 27.6
FF:10161-103A8 76 years, female 27.6
Nucleus accumbens
Scaled Tags Per Million: 43.5
FF:10037-101F1 23-56 years, mixed 43.5
Putamen
Scaled Tags Per Million: 31.8
FF:10176-103C5 60 years, female 31.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 21.0
Pig sample Sample description nTPM
Caudate
nTPM: 19.3
Samples: 4

Max nTPM: 22.6
Min nTPM: 16.2
Sample A Female 16.2
Sample B Female 20.5
Sample C Male 22.6
Sample D Male 18.0
Putamen
nTPM: 18.3
Samples: 4

Max nTPM: 21.1
Min nTPM: 16.3
Sample A Female 17.1
Sample B Female 16.3
Sample C Male 18.8
Sample D Male 21.1
Septum
nTPM: 20.3
Samples: 4

Max nTPM: 23.9
Min nTPM: 18.4
Sample A Female 19.1
Sample B Female 19.7
Sample C Male 23.9
Sample D Male 18.4
Ventral pallidum
nTPM: 21.0
Samples: 4

Max nTPM: 28.0
Min nTPM: 16.6
Sample A Female 16.6
Sample B Female 19.6
Sample C Male 28.0
Sample D Male 19.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 38.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 36.2
Samples: 4

Max nTPM: 38.5
Min nTPM: 33.8
Sample A Male 33.8
Sample B Male 37.1
Sample C Female 35.2
Sample D Female 38.5
Septum
nTPM: 34.9
Samples: 4

Max nTPM: 37.7
Min nTPM: 32.8
Sample A Male 34.6
Sample B Male 37.7
Sample C Female 34.6
Sample D Female 32.8
Ventral forebrain
nTPM: 38.3
Samples: 4

Max nTPM: 43.3
Min nTPM: 35.0
Sample A Male 35.0
Sample B Male 36.7
Sample C Female 43.3
Sample D Female 38.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
69169953 Antisense, RP_050321_04_E06, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.4
69169953 Antisense, RP_050321_04_E06, Mouse strain C57BL/6J (56 days, male) 0.4

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