MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:80.9 nTPM
HPA:80.9 nTPM
GTEx:101.4 nTPM
FANTOM5:22.5 Scaled Tags Per Million
Pig:102.7 nTPM
Mouse:119.0 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 80.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.6
2586 Male, age 75, left hemisphere 89.1
2828 Female, age 72, unknown 86.4
1827 Male, age 72, unknown 79.4
1833 Male, age 53, unknown 79.1
1870 Female, age 42, unknown 79.1
2666 Male, age 74, left hemisphere 78.6
1830 Male, age 51, unknown 75.6
2411 Female, age 72, unknown 75.2
2019 Male, age 18, unknown 72.5
2219 Male, age 76, both hemispheres 70.8
Dorsal raphe nucleus
nTPM: 79.4
2016 Female, age 72, unknown 82.8
1828 Male, age 53, unknown 80.6
2298 Female, age 72, unknown 79.6
2047 Male, age 72, unknown 78.2
2750 Male, age 76, both hemispheres 75.6
Inferior colliculus
nTPM: 78.1
1848 Female, age 42, unknown 82.8
1890 Male, age 53, unknown 77.8
2849 Male, age 72, unknown 77.8
2097 Female, age 72, unknown 74.2
Median raphe nucleus
nTPM: 75.7
2220 Male, age 76, midline 75.7
Pedunculopontine tegmental nucleus
nTPM: 79.0
2338 Male, age 61, both hemispheres 86.1
2334 Male, age 80, both hemispheres 78.6
1921 Female, age 85, both hemispheres 72.2
Periaquaductal grey, anterior
nTPM: 80.6
1795 Male, age 51, unknown 81.4
2502 Female, age 75, unknown 80.8
1947 Male, age 18, unknown 79.5
Periaquaductal grey, dorsal
nTPM: 80.4
2850 Male, age 76, both hemispheres 83.0
1831 Male, age 72, unknown 82.0
1840 Male, age 53, unknown 80.2
2464 Female, age 72, unknown 76.5
Periaquaductal grey, lateral
nTPM: 80.9
2140 Male, age 76, both hemispheres 84.5
2053 Male, age 18, unknown 84.4
2272 Male, age 74, both hemispheres 73.7
Pretectal area
nTPM: 78.4
2316 Male, age 76, right hemisphere 81.9
1817 Female, age 42, unknown 80.9
2825 Male, age 18, unknown 80.6
2667 Female, age 75, unknown 80.1
1815 Male, age 53, unknown 78.6
2224 Female, age 72, unknown 78.0
2407 Male, age 75, both hemispheres 77.9
2273 Male, age 74, both hemispheres 77.7
1944 Female, age 72, unknown 77.4
1816 Male, age 51, unknown 76.9
2007 Male, age 72, unknown 72.4
Red nucleus
nTPM: 79.4
1954 Female, age 42, unknown 83.6
1904 Male, age 53, unknown 82.0
2227 Male, age 72, unknown 81.7
2503 Female, age 72, unknown 81.5
2769 Male, age 72, unknown 81.1
2823 Male, age 76, right hemisphere 79.6
1821 Female, age 72, unknown 79.2
1865 Male, age 51, unknown 78.6
2588 Male, age 74, left hemisphere 77.8
2725 Female, age 75, unknown 77.6
2584 Male, age 75, left hemisphere 76.9
2785 Male, age 18, unknown 72.7
Substantia nigra
nTPM: 80.2
2699 Male, age 18, unknown 92.5
1916 Female, age 42, unknown 83.1
1851 Male, age 51, unknown 82.2
2665 Male, age 74, both hemispheres 81.7
2583 Male, age 75, right hemisphere 79.1
2590 Female, age 75, unknown 78.9
2409 Female, age 72, unknown 77.4
2241 Male, age 72, unknown 76.5
1889 Female, age 72, unknown 76.2
1941 Male, age 53, unknown 74.0
Superior colliculus
nTPM: 79.4
2664 Male, age 75, both hemispheres 84.6
1995 Male, age 72, unknown 83.9
1796 Male, age 53, unknown 80.7
1913 Female, age 42, unknown 79.8
2668 Female, age 75, unknown 79.6
2087 Female, age 72, unknown 79.4
1839 Male, age 51, unknown 79.3
2261 Male, age 18, unknown 78.4
2587 Male, age 74, left hemisphere 76.2
1895 Male, age 76, right hemisphere 72.6
Ventral tegmental area
nTPM: 80.2
1915 Female, age 42, unknown 82.6
1942 Male, age 51, unknown 81.7
2021 Male, age 53, unknown 79.9
2223 Female, age 72, unknown 79.9
2410 Female, age 72, unknown 78.5
2218 Male, age 76, both hemispheres 78.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 101.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 101.4
Samples: 139

Max nTPM: 303.9
Min nTPM: 13.2
Std nTPM: 51.0
Median nTPM: 91.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 303.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 293.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 283.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 253.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 219.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 216.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 207.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 191.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 190.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 177.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 175.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.5
FF:10158-103A5 76 years, female 22.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 102.7
Pig sample Sample description nTPM
Midbrain
nTPM: 102.1
Samples: 4

Max nTPM: 163.5
Min nTPM: 65.8
Sample A Female 163.5
Sample B Female 104.6
Sample C Male 74.5
Sample D Male 65.8
Periaqueductal gray
nTPM: 91.0
Samples: 3

Max nTPM: 94.3
Min nTPM: 87.4
Sample B Female 94.3
Sample C Male 91.3
Sample D Male 87.4
Substantia nigra
nTPM: 102.7
Samples: 4

Max nTPM: 128.0
Min nTPM: 78.9
Sample A Female 128.0
Sample B Female 78.9
Sample C Male 96.6
Sample D Male 107.1
Superior colliculi
nTPM: 84.1
Samples: 4

Max nTPM: 118.5
Min nTPM: 47.1
Sample A Female 118.5
Sample B Female 47.1
Sample C Male 79.1
Sample D Male 91.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 119.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 119.1
Samples: 4

Max nTPM: 136.6
Min nTPM: 106.2
Sample A Male 136.6
Sample B Male 119.5
Sample C Female 106.2
Sample D Female 113.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
68341752 Antisense, RP_041207_02_B04, Mouse strain C57BL/6J (56 days, male) 3.4
77371787 Antisense, RP_070116_01_C03, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.