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CALHM6
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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:20.9 nTPM
HPA:15.1 nTPM
GTEx:20.9 nTPM
FANTOM5:9.7 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 15.1
overview
Male, age 65
Small intestine sample 232
nTPM: 20.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 22.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 15.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 2.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 20.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 20.9
Samples: 187

Max nTPM: 78.4
Min nTPM: 1.3
Std nTPM: 15.4
Median nTPM: 17.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 78.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 73.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 66.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 65.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 56.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 56.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 54.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 51.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 51.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 49.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 48.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 48.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 48.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 48.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 46.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 46.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 42.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 41.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 41.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 41.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 41.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 40.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 40.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 39.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 38.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 38.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 38.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 37.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 37.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 36.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 36.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 36.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 36.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 35.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 35.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 35.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 34.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 34.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 33.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 33.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 33.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 33.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 32.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 31.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 31.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 30.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 30.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 29.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 29.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 29.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 28.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 27.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 27.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 27.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 27.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 26.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 26.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 26.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 26.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 25.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 25.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 24.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 24.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 24.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 24.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 23.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 23.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 23.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 23.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 22.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 22.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 22.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 21.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 21.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 21.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 21.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 21.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 20.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 20.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 19.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 19.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 19.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 19.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 18.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 18.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 18.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 18.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 17.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 17.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 17.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 17.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 17.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 17.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 17.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 17.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 16.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 16.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 16.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 15.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 15.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 15.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 15.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 15.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 15.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 14.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 14.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 14.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 14.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 14.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 13.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 13.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 13.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 13.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 12.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 12.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 12.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 12.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 12.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 12.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 11.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 11.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 11.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 11.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 11.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 11.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 11.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 10.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 10.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 10.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 10.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 10.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 10.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 10.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 10.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 9.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 9.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 9.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 9.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 9.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 9.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 8.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 8.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 8.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 8.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 8.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 8.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 7.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 7.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 7.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 7.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 7.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 7.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 7.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 6.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 6.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 5.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 5.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 5.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 5.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 5.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 5.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 5.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 5.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 4.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 4.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 4.7
GTEX-1192X-2526-SM-59868 50-59 years, male 4.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 4.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 4.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 4.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 4.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 3.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 3.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 3.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 3.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 3.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 3.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 3.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 3.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 3.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 2.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 2.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1.3
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 9.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 9.7
FF:10024-101D6 15,40,85 years, mixed 9.7

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