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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:949.6 nTPM
HPA:949.6 nTPM
GTEx:574.8 nTPM
FANTOM5:954.2 Scaled Tags Per Million
Pig:130.6 nTPM
Mouse:81.7 nTPM
Allen mouse:8.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 949.6
Sample id Sample description nTPM
Amygdala
nTPM: 949.6
2814 Male, age 76, right hemisphere 1030.2
2695 Female, age 67, right hemisphere 984.2
2514 Male, age 75, right hemisphere 949.4
1987 Female, age 91, left hemisphere 916.5
2517 Female, age 94, left hemisphere 867.7
Basal amygdala
nTPM: 885.4
2110 Male, age 80, left hemisphere 989.9
1955 Male, age 76, both hemispheres 911.9
2609 Male, age 75, right hemisphere 880.6
2685 Female, age 94, left hemisphere 858.1
2827 Female, age 67, right hemisphere 843.8
2243 Female, age 91, right hemisphere 828.1
Central amygdala
nTPM: 904.9
1905 Male, age 76, both hemispheres 969.9
2239 Male, age 80, left hemisphere 936.3
2515 Male, age 75, right hemisphere 894.8
2701 Female, age 91, right hemisphere 880.5
2826 Female, age 94, left hemisphere 843.0
Corticomedial amygdala
nTPM: 880.7
2829 Male, age 80, left hemisphere 930.7
2429 Female, age 94, left hemisphere 907.1
2240 Male, age 76, both hemispheres 900.3
2428 Male, age 75, right hemisphere 897.9
2535 Female, age 67, right hemisphere 829.6
2242 Female, age 91, right hemisphere 818.5
Lateral amygdala
nTPM: 897.8
2516 Male, age 75, right hemisphere 946.2
1883 Male, age 76, both hemispheres 938.4
2256 Male, age 80, left hemisphere 903.1
2534 Female, age 94, left hemisphere 878.6
2830 Female, age 67, right hemisphere 861.3
2255 Female, age 91, right hemisphere 859.1
Stria terminalis, bed nucleus
nTPM: 823.0
2201 Male, age 74, unknown 833.2
1974 Female, age 91, both hemispheres 824.3
2486 Female, age 94, both hemispheres 811.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 574.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 574.8
Samples: 152

Max nTPM: 1288.7
Min nTPM: 194.0
Std nTPM: 224.3
Median nTPM: 533.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1288.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1247.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1168.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1050.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1049.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1030.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1023.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1010.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 965.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 916.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 911.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 909.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 902.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 898.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 891.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 888.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 886.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 886.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 874.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 873.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 862.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 862.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 856.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 850.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 842.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 834.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 818.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 810.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 807.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 801.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 800.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 751.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 748.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 738.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 734.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 729.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 728.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 713.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 710.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 709.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 697.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 694.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 670.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 661.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 660.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 657.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 651.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 651.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 650.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 646.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 625.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 622.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 621.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 620.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 616.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 613.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 607.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 603.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 601.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 593.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 589.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 581.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 581.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 579.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 578.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 576.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 573.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 573.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 571.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 569.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 565.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 562.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 560.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 545.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 539.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 534.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 532.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 529.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 529.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 525.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 518.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 517.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 516.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 511.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 507.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 506.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 506.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 497.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 497.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 494.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 492.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 490.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 481.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 476.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 470.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 469.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 457.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 455.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 454.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 441.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 434.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 434.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 434.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 432.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 428.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 424.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 422.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 419.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 416.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 415.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 411.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 405.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 403.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 399.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 399.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 394.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 393.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 392.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 382.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 380.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 377.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 375.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 375.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 369.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 358.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 357.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 351.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 350.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 341.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 331.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 329.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 328.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 327.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 324.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 322.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 322.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 318.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 317.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 316.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 315.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 303.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 301.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 300.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 298.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 288.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 283.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 282.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 259.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 254.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 230.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 229.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 194.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 954.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 954.2
FF:10151-102I7 76 years, female 954.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 130.6
Pig sample Sample description nTPM
Amygdala
nTPM: 130.6
Samples: 4

Max nTPM: 215.6
Min nTPM: 65.8
Sample A Female 84.0
Sample B Female 215.6
Sample C Male 156.9
Sample D Male 65.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 81.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 81.7
Samples: 4

Max nTPM: 97.0
Min nTPM: 68.0
Sample A Male 78.5
Sample B Male 68.0
Sample C Female 97.0
Sample D Female 83.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 8.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.2
71380893 Antisense, RP_050421_01_F01, Mouse strain C57BL/6J (56 days, male) 8.2

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