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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1027.5 nTPM
HPA:1027.5 nTPM
GTEx:1252.1 nTPM
FANTOM5:3053.2 Scaled Tags Per Million
Pig:3917.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 1027.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 957.5
1981 Female, age 72, midline 1025.0
2816 Male, age 47, midline 976.7
2194 Female, age 79, both hemispheres 938.5
2048 Male, age 55, midline 932.8
2565 Male, age 75, midline 914.2
Cervical spinal cord, dorsal horn
nTPM: 1027.5
2296 Male, age 66, both hemispheres 1284.9
2173 Female, age 72, unknown 1132.2
2069 Male, age 47, both hemispheres 977.0
1877 Male, age 55, unknown 953.4
2721 Male, age 90, both hemispheres 921.8
2297 Male, age 75, both hemispheres 895.9
Cervical spinal cord, ventral horn
nTPM: 957.3
2098 Female, age 72, unknown 1038.5
2068 Male, age 55, unknown 978.9
2820 Female, age 79, both hemispheres 964.9
2480 Male, age 75, both hemispheres 940.3
2295 Male, age 66, both hemispheres 911.1
2809 Male, age 90, both hemispheres 910.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1252.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1252.1
Samples: 159

Max nTPM: 3910.1
Min nTPM: 360.6
Std nTPM: 496.2
Median nTPM: 1213.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 3910.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 2859.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2381.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 2341.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2323.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2300.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2298.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 2260.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2238.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2060.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 2037.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2018.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 2010.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1974.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1874.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1866.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1784.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1770.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1760.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1760.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1740.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1738.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1680.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1675.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1668.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1656.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1646.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1606.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1587.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1563.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1562.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1554.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1551.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1550.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1549.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1539.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1531.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1514.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1481.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1471.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1468.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1464.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1459.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1455.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1441.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1441.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1432.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1414.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1408.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1405.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1385.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1358.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1353.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1352.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1350.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1347.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1347.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1345.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1343.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1342.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1339.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1321.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1306.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1305.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1303.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1299.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1296.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1281.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1267.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1265.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1259.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1256.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1249.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1249.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1245.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1234.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1230.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1223.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1216.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1213.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1187.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1177.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1163.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1160.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1152.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1143.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1143.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1139.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1139.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1131.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1125.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1121.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1103.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1093.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1090.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1072.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1068.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1067.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1057.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1038.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1017.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1013.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1004.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1001.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1001.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 995.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 991.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 991.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 988.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 986.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 982.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 976.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 976.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 962.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 958.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 957.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 947.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 944.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 936.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 930.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 925.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 923.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 920.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 917.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 901.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 891.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 888.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 878.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 878.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 861.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 853.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 845.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 832.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 830.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 828.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 826.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 822.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 821.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 817.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 775.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 757.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 743.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 738.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 737.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 671.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 664.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 635.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 598.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 598.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 596.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 553.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 552.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 514.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 499.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 466.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 427.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 412.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 385.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 360.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 3053.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 3053.2
FF:10181-103D1 60 years, female 3764.0
FF:10159-103A6 76 years, female 2342.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3917.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 3917.2
Samples: 4

Max nTPM: 6078.6
Min nTPM: 2162.7
Sample A Female 2162.7
Sample B Female 3896.8
Sample C Male 6078.6
Sample D Male 3530.8
Ventral spinal cord
nTPM: 3525.8
Samples: 4

Max nTPM: 4332.5
Min nTPM: 2617.3
Sample A Female 3099.9
Sample B Female 2617.3
Sample C Male 4332.5
Sample D Male 4053.4

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