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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:1122.0 nTPM
HPA:1122.0 nTPM
FANTOM5:1443.2 Scaled Tags Per Million
Pig:989.7 nTPM
Allen mouse:14.7 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 1122.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 1039.5
2301 Female, age 85, both hemispheres 1153.3
2188 Female, age 91, both hemispheres 1091.3
2090 Male, age 80, both hemispheres 1029.8
1984 Male, age 76, both hemispheres 883.4
Dorsal cochlear nucleus
nTPM: 989.0
2378 Male, age 80, both hemispheres 1058.9
2187 Female, age 91, both hemispheres 1055.7
2370 Male, age 61, both hemispheres 965.0
2802 Male, age 74, right hemisphere 937.5
2058 Male, age 76, both hemispheres 927.8
Dorsal tegmental nucleus
nTPM: 961.5
2083 Male, age 80, both hemispheres 1022.1
2326 Male, age 74, both hemispheres 994.9
1936 Male, age 76, left hemisphere 923.6
2358 Male, age 61, both hemispheres 905.2
Dorsolateral tegmental area
nTPM: 969.8
2751 Female, age 85, both hemispheres 1099.3
2654 Male, age 80, both hemispheres 1004.8
2337 Male, age 61, both hemispheres 947.4
2360 Male, age 74, both hemispheres 917.5
2141 Male, age 76, both hemispheres 879.8
Kolliker-Fuse nucleus
nTPM: 1037.7
2793 Female, age 91, left hemisphere 1179.2
2315 Male, age 76, right hemisphere 975.2
2163 Male, age 80, both hemispheres 958.7
Lateral lemniscal nuclei
nTPM: 985.1
2320 Female, age 91, left hemisphere 1073.0
2036 Male, age 80, both hemispheres 985.7
2746 Female, age 85, left hemisphere 972.2
2169 Male, age 76, both hemispheres 963.6
2453 Male, age 74, right hemisphere 931.1
Lateral parabrachial nucleus
nTPM: 1015.9
2792 Male, age 76, both hemispheres 1233.1
2013 Male, age 80, both hemispheres 980.7
2139 Female, age 85, right hemisphere 941.4
2790 Male, age 61, both hemispheres 908.2
Lateral vestibular nucleus
nTPM: 981.1
2311 Male, age 80, both hemispheres 1013.5
2184 Male, age 76, both hemispheres 948.8
Locus coeruleus
nTPM: 868.6
2720 Male, age 74, both hemispheres 935.5
2162 Male, age 80, both hemispheres 916.3
2788 Male, age 74, unknown 866.5
2317 Female, age 72, unknown 859.9
2123 Female, age 91, both hemispheres 840.7
2014 Male, age 55, unknown 834.8
1980 Male, age 76, both hemispheres 826.6
Medial olivary nucleus
nTPM: 1122.0
1943 Male, age 61, both hemispheres 1230.2
1962 Male, age 76, both hemispheres 1149.8
2851 Male, age 80, both hemispheres 1095.2
2138 Female, age 91, both hemispheres 1012.8
Medial parabrachial nucleus
nTPM: 1017.4
2170 Female, age 91, both hemispheres 1106.0
2854 Male, age 80, both hemispheres 1057.1
2463 Female, age 85, right hemisphere 1000.4
2786 Male, age 76, both hemispheres 982.0
2156 Male, age 61, both hemispheres 941.5
Medial periolivary nuclei
nTPM: 960.9
2791 Male, age 74, right hemisphere 1040.1
2458 Female, age 91, both hemispheres 1026.6
2081 Male, age 80, both hemispheres 957.2
2063 Male, age 76, both hemispheres 904.1
2171 Female, age 85, both hemispheres 876.4
Motor facial nucleus
nTPM: 1007.5
2697 Female, age 85, both hemispheres 1125.9
2365 Male, age 74, right hemisphere 1098.0
2126 Male, age 61, both hemispheres 1047.2
2795 Female, age 91, both hemispheres 974.5
2327 Male, age 80, both hemispheres 923.0
2062 Male, age 76, both hemispheres 876.7
Motor trigeminal nucleus
nTPM: 979.4
2321 Female, age 91, both hemispheres 1033.1
2560 Male, age 74, both hemispheres 1029.0
2335 Male, age 61, both hemispheres 966.6
2309 Male, age 76, both hemispheres 953.5
2079 Male, age 80, both hemispheres 914.8
Nuclei of the trapezoid body
nTPM: 934.6
2166 Male, age 80, both hemispheres 977.3
2368 Female, age 91, both hemispheres 977.1
2159 Male, age 61, both hemispheres 958.5
1983 Male, age 76, both hemispheres 915.8
2735 Female, age 85, both hemispheres 844.2
Paramedian reticular nucleus
nTPM: 982.4
2052 Male, age 76, both hemispheres 1041.3
2050 Female, age 85, both hemispheres 967.1
2313 Male, age 61, both hemispheres 964.2
2057 Male, age 80, both hemispheres 957.0
Pontine nuclei
nTPM: 1001.1
2454 Male, age 74, left hemisphere 1217.7
2319 Female, age 91, both hemispheres 1115.2
2109 Female, age 72, unknown 1030.5
1968 Male, age 76, left hemisphere 964.2
1863 Male, age 55, unknown 962.4
2115 Male, age 80, left hemisphere 947.6
2727 Male, age 61, right hemisphere 887.6
2787 Female, age 85, both hemispheres 883.1
Pontine raphe nucleus
nTPM: 912.1
2853 Male, age 76, midline 926.4
2122 Female, age 85, midline 897.9
Posteroventral cochlear nucleus
nTPM: 1045.5
2135 Female, age 91, both hemispheres 1132.4
2341 Male, age 80, both hemispheres 1122.2
2371 Male, age 61, both hemispheres 1071.3
2070 Male, age 76, both hemispheres 972.1
2752 Female, age 85, both hemispheres 929.3
Principal sensory trigeminal nucleus
nTPM: 965.7
2367 Female, age 91, left hemisphere 1118.3
2324 Male, age 76, both hemispheres 957.3
2158 Male, age 61, both hemispheres 903.9
2008 Male, age 80, left hemisphere 883.5
Reticular pontine nucleus, caudal
nTPM: 1000.5
2559 Male, age 74, both hemispheres 1067.9
2457 Female, age 91, both hemispheres 1059.1
2092 Male, age 76, both hemispheres 967.8
2332 Male, age 80, right hemisphere 907.2
Reticular pontine nucleus, oral
nTPM: 1087.8
2361 Male, age 74, both hemispheres 1185.3
2366 Female, age 91, both hemispheres 1155.0
2167 Male, age 76, both hemispheres 1071.2
1939 Male, age 80, both hemispheres 1033.0
2012 Female, age 85, both hemispheres 994.6
Reticulotegmental nucleus
nTPM: 948.7
2322 Female, age 91, both hemispheres 1018.7
2333 Male, age 80, both hemispheres 961.3
2452 Male, age 74, both hemispheres 942.6
2325 Male, age 76, both hemispheres 872.0
Spinal trigeminal nucleus, oral
nTPM: 944.4
2164 Male, age 80, both hemispheres 971.4
1978 Male, age 76, both hemispheres 962.5
2737 Female, age 85, both hemispheres 899.2
Subcoeruleus area
nTPM: 979.6
2369 Female, age 85, left hemisphere 1164.7
1958 Male, age 80, both hemispheres 964.2
2089 Male, age 76, left hemisphere 941.5
2451 Male, age 74, both hemispheres 916.2
2323 Female, age 91, left hemisphere 911.2
Superior olive
nTPM: 1008.9
2364 Male, age 74, right hemisphere 1091.0
2020 Male, age 76, both hemispheres 1027.4
2561 Female, age 91, both hemispheres 1016.0
2329 Male, age 80, right hemisphere 975.3
1875 Female, age 85, both hemispheres 935.1
Superior vestibular nucleus
nTPM: 951.7
2015 Male, age 80, both hemispheres 974.9
2383 Male, age 74, both hemispheres 947.2
2061 Male, age 76, both hemispheres 933.0
Ventral periolivary nuclei
nTPM: 963.4
2023 Male, age 76, both hemispheres 1048.0
2794 Female, age 91, left hemisphere 947.9
2165 Male, age 80, both hemispheres 938.9
2130 Female, age 85, both hemispheres 918.8
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1019.2
2840 Female, age 85, both hemispheres 1092.6
2456 Female, age 91, both hemispheres 1039.3
2359 Male, age 61, both hemispheres 1027.2
2449 Male, age 74, both hemispheres 1000.2
1959 Male, age 76, both hemispheres 994.1
2161 Male, age 80, both hemispheres 961.5

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 1443.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 1321.4
FF:10165-103B3 76 years, female 1383.8
FF:10182-103D2 60 years, female 1259.1
Pons
Scaled Tags Per Million: 1443.2
FF:10033-101E6 18-54 years, mixed 1443.2

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 989.7
Pig sample Sample description nTPM
Pons
nTPM: 989.7
Samples: 4

Max nTPM: 1939.6
Min nTPM: 528.7
Sample A Female 533.8
Sample B Female 528.7
Sample C Male 956.7
Sample D Male 1939.6

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 14.7
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 14.7
71380893 Antisense, RP_050421_01_F01, Mouse strain C57BL/6J (56 days, male) 14.7

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