MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:79.4 nTPM
HPA:79.4 nTPM
GTEx:67.9 nTPM
FANTOM5:183.3 Scaled Tags Per Million
Pig:29.8 nTPM
Mouse:38.1 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 79.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.8
1830 Male, age 51, unknown 85.7
1833 Male, age 53, unknown 81.5
1870 Female, age 42, unknown 78.7
2411 Female, age 72, unknown 77.6
2019 Male, age 18, unknown 77.4
2828 Female, age 72, unknown 59.7
2586 Male, age 75, left hemisphere 55.3
2666 Male, age 74, left hemisphere 54.5
1827 Male, age 72, unknown 52.5
2219 Male, age 76, both hemispheres 45.6
Dorsal raphe nucleus
nTPM: 57.2
2750 Male, age 76, both hemispheres 74.0
2016 Female, age 72, unknown 57.4
1828 Male, age 53, unknown 56.6
2298 Female, age 72, unknown 51.4
2047 Male, age 72, unknown 46.4
Inferior colliculus
nTPM: 50.4
1848 Female, age 42, unknown 56.7
2849 Male, age 72, unknown 51.5
1890 Male, age 53, unknown 51.0
2097 Female, age 72, unknown 42.6
Median raphe nucleus
nTPM: 58.6
2220 Male, age 76, midline 58.6
Pedunculopontine tegmental nucleus
nTPM: 70.0
2338 Male, age 61, both hemispheres 87.4
2334 Male, age 80, both hemispheres 68.5
1921 Female, age 85, both hemispheres 54.0
Periaquaductal grey, anterior
nTPM: 48.9
2502 Female, age 75, unknown 55.9
1947 Male, age 18, unknown 47.1
1795 Male, age 51, unknown 43.7
Periaquaductal grey, dorsal
nTPM: 49.1
2850 Male, age 76, both hemispheres 55.8
2464 Female, age 72, unknown 52.4
1831 Male, age 72, unknown 47.7
1840 Male, age 53, unknown 40.6
Periaquaductal grey, lateral
nTPM: 54.4
2272 Male, age 74, both hemispheres 58.8
2053 Male, age 18, unknown 54.0
2140 Male, age 76, both hemispheres 50.4
Pretectal area
nTPM: 52.3
2407 Male, age 75, both hemispheres 60.5
1815 Male, age 53, unknown 60.3
2273 Male, age 74, both hemispheres 58.9
2316 Male, age 76, right hemisphere 57.2
1817 Female, age 42, unknown 54.8
2825 Male, age 18, unknown 53.5
2224 Female, age 72, unknown 52.9
2007 Male, age 72, unknown 51.0
2667 Female, age 75, unknown 49.0
1944 Female, age 72, unknown 40.8
1816 Male, age 51, unknown 36.7
Red nucleus
nTPM: 79.4
1865 Male, age 51, unknown 99.7
1904 Male, age 53, unknown 89.3
2769 Male, age 72, unknown 87.6
2227 Male, age 72, unknown 87.4
1821 Female, age 72, unknown 86.5
2785 Male, age 18, unknown 80.9
2823 Male, age 76, right hemisphere 79.7
1954 Female, age 42, unknown 76.2
2503 Female, age 72, unknown 72.5
2584 Male, age 75, left hemisphere 67.5
2725 Female, age 75, unknown 62.9
2588 Male, age 74, left hemisphere 62.2
Substantia nigra
nTPM: 60.8
2590 Female, age 75, unknown 76.5
2699 Male, age 18, unknown 69.6
1851 Male, age 51, unknown 67.8
2583 Male, age 75, right hemisphere 67.3
2409 Female, age 72, unknown 62.7
1889 Female, age 72, unknown 57.8
2241 Male, age 72, unknown 53.6
2665 Male, age 74, both hemispheres 53.3
1916 Female, age 42, unknown 50.1
1941 Male, age 53, unknown 49.4
Superior colliculus
nTPM: 58.9
1913 Female, age 42, unknown 82.4
1995 Male, age 72, unknown 80.8
2587 Male, age 74, left hemisphere 68.0
1839 Male, age 51, unknown 59.8
1895 Male, age 76, right hemisphere 57.9
2664 Male, age 75, both hemispheres 51.2
1796 Male, age 53, unknown 51.1
2668 Female, age 75, unknown 50.6
2087 Female, age 72, unknown 46.1
2261 Male, age 18, unknown 41.6
Ventral tegmental area
nTPM: 63.8
2223 Female, age 72, unknown 80.0
2410 Female, age 72, unknown 69.1
2021 Male, age 53, unknown 62.9
2218 Male, age 76, both hemispheres 59.1
1915 Female, age 42, unknown 56.0
1942 Male, age 51, unknown 55.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 67.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.9
Samples: 139

Max nTPM: 159.6
Min nTPM: 19.8
Std nTPM: 23.9
Median nTPM: 62.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 159.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 135.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 128.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 125.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 123.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 120.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 119.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 116.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 115.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 114.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 113.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 183.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 183.3
FF:10158-103A5 76 years, female 183.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.8
Pig sample Sample description nTPM
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 36.4
Min nTPM: 17.8
Sample A Female 36.4
Sample B Female 28.3
Sample C Male 21.2
Sample D Male 17.8
Periaqueductal gray
nTPM: 25.9
Samples: 3

Max nTPM: 27.6
Min nTPM: 24.2
Sample B Female 27.6
Sample C Male 25.8
Sample D Male 24.2
Substantia nigra
nTPM: 29.8
Samples: 4

Max nTPM: 33.3
Min nTPM: 24.9
Sample A Female 33.3
Sample B Female 24.9
Sample C Male 29.6
Sample D Male 31.5
Superior colliculi
nTPM: 26.6
Samples: 4

Max nTPM: 33.1
Min nTPM: 20.6
Sample A Female 33.1
Sample B Female 20.6
Sample C Male 25.8
Sample D Male 26.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 42.9
Min nTPM: 35.1
Sample A Male 42.9
Sample B Male 37.4
Sample C Female 35.1
Sample D Female 37.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68269586 Antisense, RP_041129_01_H03, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.