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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:57.9 nTPM
HPA:51.9 nTPM
GTEx:57.9 nTPM
FANTOM5:166.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA006960
Glandular cells Low



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 51.9
overview
Male, age 65
Small intestine sample 232
nTPM: 48.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 39.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 51.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 68.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 57.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 57.9
Samples: 187

Max nTPM: 184.6
Min nTPM: 23.4
Std nTPM: 23.5
Median nTPM: 52.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 184.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 139.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 137.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 130.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 124.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 118.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 107.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 106.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 103.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 103.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 99.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 99.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 95.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 94.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 93.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 92.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 91.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 91.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 89.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 87.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 87.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 85.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 84.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 82.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 82.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 81.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 81.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 81.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 79.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 76.4
GTEX-1192X-2526-SM-59868 50-59 years, male 75.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 74.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 73.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 73.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 73.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 72.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 72.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 71.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 71.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 70.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 70.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 70.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 69.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 68.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 67.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 67.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 67.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 67.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 66.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 66.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 66.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 66.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 65.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 63.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 62.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 62.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 62.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 62.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 62.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 62.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 61.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 61.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 60.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 60.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 60.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 60.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 60.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 60.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 59.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 58.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 58.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 57.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 56.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 56.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 56.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 55.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 55.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 54.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 54.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 53.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 53.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 53.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 53.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 53.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 53.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 53.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 53.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 52.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 52.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 52.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 52.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 52.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 52.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 52.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 51.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 51.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 51.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 50.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 50.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 50.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 50.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 50.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 50.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 49.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 49.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 49.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 49.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 49.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 48.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 48.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 48.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 48.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 48.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 48.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 48.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 48.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 47.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 47.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 47.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 47.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 46.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 46.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 46.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 46.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 46.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 45.3
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 45.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 44.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 44.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 44.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 44.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 44.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 44.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 44.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 43.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 43.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 43.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 43.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 42.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 42.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 42.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 41.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 41.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 41.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 41.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 41.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 40.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 40.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 40.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 40.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 40.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 39.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 39.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 39.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 39.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 39.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 39.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 38.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 37.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 37.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 37.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 37.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 36.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 35.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 35.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 35.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 35.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 35.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 35.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 35.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 35.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 35.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 34.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 34.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 33.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 33.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 31.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 31.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 31.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 31.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 30.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 30.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 30.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 27.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 26.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 24.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 23.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 166.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 166.0
FF:10024-101D6 15,40,85 years, mixed 166.0

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