BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:5.9 nTPM
HPA:5.9 nTPM
GTEx:2.9 nTPM
FANTOM5:11.8 Scaled Tags Per Million
Pig:2.1 nTPM
Mouse:0.8 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.8
2481 Female, age 94, left hemisphere 6.1
1857 Female, age 85, left hemisphere 5.9
2846 Female, age 79, unknown 5.8
1781 Male, age 74, unknown 5.7
1854 Male, age 80, left hemisphere 5.7
2288 Male, age 75, left hemisphere 5.7
2289 Male, age 61, right hemisphere 5.7
2290 Female, age 72, unknown 5.7
Claustrum
nTPM: 5.4
2491 Male, age 75, both hemispheres 5.8
1956 Male, age 74, unknown 5.5
2196 Female, age 79, unknown 5.5
2198 Male, age 80, both hemispheres 5.4
2292 Female, age 85, both hemispheres 5.4
2645 Female, age 72, unknown 5.4
2284 Female, age 91, both hemispheres 5.3
2392 Female, age 94, both hemispheres 5.2
2568 Male, age 61, both hemispheres 5.2
Globus pallidus, externus
nTPM: 5.6
1996 Male, age 80, right hemisphere 5.8
2395 Male, age 75, both hemispheres 5.7
2567 Female, age 72, unknown 5.7
2772 Female, age 79, unknown 5.7
2646 Male, age 61, right hemisphere 5.1
Globus pallidus, internus
nTPM: 5.9
2111 Female, age 85, right hemisphere 6.2
1818 Male, age 74, unknown 6.1
2037 Male, age 80, right hemisphere 6.0
2287 Male, age 75, right hemisphere 6.0
2566 Female, age 72, unknown 5.8
2778 Female, age 91, both hemispheres 5.8
2483 Female, age 94, right hemisphere 5.4
Nucleus accumbens
nTPM: 5.6
1806 Female, age 85, left hemisphere 5.9
1856 Female, age 91, right hemisphere 5.7
2391 Female, age 94, left hemisphere 5.7
2698 Female, age 72, unknown 5.7
1783 Male, age 74, unknown 5.6
2286 Male, age 75, left hemisphere 5.6
2824 Male, age 61, right hemisphere 5.4
2732 Male, age 80, right hemisphere 5.2
Nucleus basalis of Meynert
nTPM: 5.6
2821 Male, age 75, both hemispheres 6.0
2393 Male, age 80, right hemisphere 5.7
2484 Female, age 94, left hemisphere 5.7
2569 Male, age 61, both hemispheres 5.0
Nucleus of the diagonal band
nTPM: 5.3
1979 Male, age 74, unknown 5.4
2195 Female, age 85, both hemispheres 5.4
1812 Female, age 91, both hemispheres 5.3
2775 Male, age 80, right hemisphere 5.2
2029 Male, age 61, right hemisphere 5.1
Olfactory tubercle
nTPM: 5.4
2487 Female, age 94, left hemisphere 5.5
2856 Male, age 75, right hemisphere 5.5
1846 Male, age 80, right hemisphere 5.4
1998 Female, age 91, both hemispheres 5.2
Putamen
nTPM: 5.8
2489 Female, age 72, unknown 5.9
1829 Male, age 74, unknown 5.8
1838 Male, age 80, right hemisphere 5.8
1937 Female, age 91, right hemisphere 5.8
2482 Female, age 94, left hemisphere 5.8
2647 Male, age 75, left hemisphere 5.7
2466 Female, age 79, unknown 5.6
Septal nuclei
nTPM: 5.2
2199 Male, age 80, right hemisphere 5.5
2031 Female, age 72, unknown 5.4
2059 Female, age 85, both hemispheres 5.4
2629 Female, age 94, right hemisphere 5.3
1960 Male, age 74, unknown 5.2
2009 Female, age 91, both hemispheres 5.1
2394 Male, age 61, left hemisphere 4.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 2.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.6
Samples: 246

Max nTPM: 8.0
Min nTPM: 0.8
Std nTPM: 1.0
Median nTPM: 2.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 8.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 7.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 5.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 5.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 5.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 5.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 5.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 5.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 5.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 4.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 4.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.4
Samples: 246

Max nTPM: 11.4
Min nTPM: 0.8
Std nTPM: 1.1
Median nTPM: 2.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 11.4
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 7.6
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 6.3
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 6.1
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 5.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 5.2
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 4.9
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 4.9
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 4.8
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 4.8
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 4.7
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Brain - Putamen (basal ganglia)
Average nTPM: 2.9
Samples: 205

Max nTPM: 8.9
Min nTPM: 1.0
Std nTPM: 1.3
Median nTPM: 2.5
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 8.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 8.3
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 8.1
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 7.3
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 6.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 6.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 6.0
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 5.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 5.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 5.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 5.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 7.3
FF:10164-103B2 76 years, female 7.3
Globus pallidus
Scaled Tags Per Million: 7.1
FF:10175-103C4 60 years, female 7.8
FF:10161-103A8 76 years, female 6.3
Nucleus accumbens
Scaled Tags Per Million: 7.7
FF:10037-101F1 23-56 years, mixed 7.7
Putamen
Scaled Tags Per Million: 11.8
FF:10176-103C5 60 years, female 11.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.1
Pig sample Sample description nTPM
Caudate
nTPM: 2.1
Samples: 4

Max nTPM: 2.7
Min nTPM: 1.7
Sample A Female 2.7
Sample B Female 2.0
Sample C Male 1.7
Sample D Male 1.9
Putamen
nTPM: 1.6
Samples: 4

Max nTPM: 1.8
Min nTPM: 1.3
Sample A Female 1.3
Sample B Female 1.8
Sample C Male 1.6
Sample D Male 1.7
Septum
nTPM: 2.1
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.6
Sample A Female 2.8
Sample B Female 1.6
Sample C Male 2.2
Sample D Male 1.8
Ventral pallidum
nTPM: 1.8
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.2
Sample A Female 2.2
Sample B Female 1.9
Sample C Male 1.2
Sample D Male 1.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.2
Sample A Male 0.3
Sample B Male 0.2
Sample C Female 0.5
Sample D Female 0.4
Septum
nTPM: 0.8
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.6
Sample A Male 0.6
Sample B Male 0.6
Sample C Female 0.9
Sample D Female 1.1
Ventral forebrain
nTPM: 0.5
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.4
Sample A Male 0.4
Sample B Male 0.4
Sample C Female 0.6
Sample D Female 0.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
69407785 Antisense, RP_050414_02_D03, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
69407785 Antisense, RP_050414_02_D03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

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