MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:22.2 nTPM
HPA:22.2 nTPM
GTEx:42.5 nTPM
FANTOM5:56.0 Scaled Tags Per Million
Pig:53.8 nTPM
Mouse:113.5 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.6
1827 Male, age 72, unknown 17.7
2411 Female, age 72, unknown 13.7
1870 Female, age 42, unknown 12.8
2219 Male, age 76, both hemispheres 9.9
2666 Male, age 74, left hemisphere 9.7
2586 Male, age 75, left hemisphere 9.6
1833 Male, age 53, unknown 7.9
1830 Male, age 51, unknown 6.6
2019 Male, age 18, unknown 4.5
2828 Female, age 72, unknown 3.8
Dorsal raphe nucleus
nTPM: 10.4
2298 Female, age 72, unknown 20.9
2047 Male, age 72, unknown 12.4
1828 Male, age 53, unknown 8.1
2750 Male, age 76, both hemispheres 6.3
2016 Female, age 72, unknown 4.3
Inferior colliculus
nTPM: 22.2
2097 Female, age 72, unknown 31.9
2849 Male, age 72, unknown 22.4
1848 Female, age 42, unknown 21.7
1890 Male, age 53, unknown 12.6
Median raphe nucleus
nTPM: 14.9
2220 Male, age 76, midline 14.9
Pedunculopontine tegmental nucleus
nTPM: 11.8
1921 Female, age 85, both hemispheres 19.8
2334 Male, age 80, both hemispheres 11.9
2338 Male, age 61, both hemispheres 3.6
Periaquaductal grey, anterior
nTPM: 15.9
1947 Male, age 18, unknown 19.2
2502 Female, age 75, unknown 15.1
1795 Male, age 51, unknown 13.4
Periaquaductal grey, dorsal
nTPM: 12.4
1840 Male, age 53, unknown 21.9
2464 Female, age 72, unknown 12.9
2850 Male, age 76, both hemispheres 8.3
1831 Male, age 72, unknown 6.6
Periaquaductal grey, lateral
nTPM: 8.2
2053 Male, age 18, unknown 9.7
2140 Male, age 76, both hemispheres 9.4
2272 Male, age 74, both hemispheres 5.5
Pretectal area
nTPM: 12.9
1816 Male, age 51, unknown 19.8
2224 Female, age 72, unknown 18.3
2007 Male, age 72, unknown 16.8
1944 Female, age 72, unknown 16.2
1817 Female, age 42, unknown 15.1
2825 Male, age 18, unknown 14.5
1815 Male, age 53, unknown 9.6
2316 Male, age 76, right hemisphere 9.0
2667 Female, age 75, unknown 8.9
2407 Male, age 75, both hemispheres 7.4
2273 Male, age 74, both hemispheres 5.8
Red nucleus
nTPM: 2.2
2725 Female, age 75, unknown 7.1
2584 Male, age 75, left hemisphere 6.4
1821 Female, age 72, unknown 4.6
2785 Male, age 18, unknown 4.6
2227 Male, age 72, unknown 2.0
2769 Male, age 72, unknown 1.6
1954 Female, age 42, unknown 0.3
2588 Male, age 74, left hemisphere 0.3
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
2503 Female, age 72, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 7.5
1941 Male, age 53, unknown 17.2
1889 Female, age 72, unknown 14.5
2241 Male, age 72, unknown 9.1
1916 Female, age 42, unknown 8.9
2665 Male, age 74, both hemispheres 7.4
2590 Female, age 75, unknown 6.1
1851 Male, age 51, unknown 5.9
2583 Male, age 75, right hemisphere 4.9
2409 Female, age 72, unknown 1.1
2699 Male, age 18, unknown 0.0
Superior colliculus
nTPM: 10.6
1895 Male, age 76, right hemisphere 19.8
1839 Male, age 51, unknown 18.6
1796 Male, age 53, unknown 16.6
2261 Male, age 18, unknown 14.7
2087 Female, age 72, unknown 12.6
2664 Male, age 75, both hemispheres 11.4
2668 Female, age 75, unknown 6.9
2587 Male, age 74, left hemisphere 5.2
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
Ventral tegmental area
nTPM: 8.4
2223 Female, age 72, unknown 12.7
1915 Female, age 42, unknown 10.1
2218 Male, age 76, both hemispheres 7.8
1942 Male, age 51, unknown 6.9
2021 Male, age 53, unknown 6.6
2410 Female, age 72, unknown 6.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.5
Samples: 139

Max nTPM: 158.0
Min nTPM: 13.9
Std nTPM: 21.8
Median nTPM: 36.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 158.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 118.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 103.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 102.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 96.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 78.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 78.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 78.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 77.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 77.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 75.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.0
FF:10158-103A5 76 years, female 56.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 53.8
Pig sample Sample description nTPM
Midbrain
nTPM: 50.8
Samples: 4

Max nTPM: 61.7
Min nTPM: 40.2
Sample A Female 41.4
Sample B Female 40.2
Sample C Male 60.0
Sample D Male 61.7
Periaqueductal gray
nTPM: 49.9
Samples: 3

Max nTPM: 59.3
Min nTPM: 45.1
Sample B Female 45.1
Sample C Male 59.3
Sample D Male 45.4
Substantia nigra
nTPM: 41.6
Samples: 4

Max nTPM: 53.9
Min nTPM: 27.9
Sample A Female 53.9
Sample B Female 31.8
Sample C Male 52.7
Sample D Male 27.9
Superior colliculi
nTPM: 53.8
Samples: 4

Max nTPM: 67.1
Min nTPM: 43.2
Sample A Female 67.1
Sample B Female 43.2
Sample C Male 51.0
Sample D Male 53.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 113.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 113.5
Samples: 4

Max nTPM: 116.2
Min nTPM: 108.8
Sample A Male 108.8
Sample B Male 116.2
Sample C Female 115.1
Sample D Female 113.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
393194 Antisense, RP_040804_02_C02, Mouse strain C57BL/6J (56 days, male) 3.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.