MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:50.7 nTPM
HPA:50.7 nTPM
GTEx:42.4 nTPM
FANTOM5:28.4 Scaled Tags Per Million
Pig:65.6 nTPM
Mouse:60.8 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.1
2019 Male, age 18, unknown 59.9
2828 Female, age 72, unknown 54.2
1870 Female, age 42, unknown 52.5
1830 Male, age 51, unknown 49.5
2411 Female, age 72, unknown 49.5
1833 Male, age 53, unknown 49.4
2586 Male, age 75, left hemisphere 49.3
1827 Male, age 72, unknown 47.5
2666 Male, age 74, left hemisphere 46.0
2219 Male, age 76, both hemispheres 43.2
Dorsal raphe nucleus
nTPM: 48.3
1828 Male, age 53, unknown 49.5
2016 Female, age 72, unknown 48.8
2047 Male, age 72, unknown 48.2
2750 Male, age 76, both hemispheres 48.2
2298 Female, age 72, unknown 46.9
Inferior colliculus
nTPM: 50.0
1848 Female, age 42, unknown 50.6
1890 Male, age 53, unknown 50.0
2849 Male, age 72, unknown 49.9
2097 Female, age 72, unknown 49.6
Median raphe nucleus
nTPM: 48.4
2220 Male, age 76, midline 48.4
Pedunculopontine tegmental nucleus
nTPM: 49.0
2338 Male, age 61, both hemispheres 50.4
1921 Female, age 85, both hemispheres 48.8
2334 Male, age 80, both hemispheres 47.8
Periaquaductal grey, anterior
nTPM: 46.6
2502 Female, age 75, unknown 48.7
1947 Male, age 18, unknown 46.0
1795 Male, age 51, unknown 44.9
Periaquaductal grey, dorsal
nTPM: 49.6
2850 Male, age 76, both hemispheres 52.6
1831 Male, age 72, unknown 48.7
1840 Male, age 53, unknown 48.6
2464 Female, age 72, unknown 48.4
Periaquaductal grey, lateral
nTPM: 47.2
2140 Male, age 76, both hemispheres 49.4
2053 Male, age 18, unknown 46.8
2272 Male, age 74, both hemispheres 45.5
Pretectal area
nTPM: 48.9
2407 Male, age 75, both hemispheres 55.3
2316 Male, age 76, right hemisphere 50.9
1817 Female, age 42, unknown 50.3
2667 Female, age 75, unknown 50.0
1815 Male, age 53, unknown 48.0
2273 Male, age 74, both hemispheres 47.5
2007 Male, age 72, unknown 47.4
2224 Female, age 72, unknown 47.3
1944 Female, age 72, unknown 47.1
1816 Male, age 51, unknown 46.9
2825 Male, age 18, unknown 46.7
Red nucleus
nTPM: 50.7
1821 Female, age 72, unknown 54.7
1954 Female, age 42, unknown 54.7
1865 Male, age 51, unknown 54.3
1904 Male, age 53, unknown 53.0
2769 Male, age 72, unknown 51.8
2227 Male, age 72, unknown 51.3
2503 Female, age 72, unknown 50.3
2725 Female, age 75, unknown 49.6
2823 Male, age 76, right hemisphere 49.6
2785 Male, age 18, unknown 47.6
2588 Male, age 74, left hemisphere 47.1
2584 Male, age 75, left hemisphere 44.9
Substantia nigra
nTPM: 49.3
2409 Female, age 72, unknown 54.9
2241 Male, age 72, unknown 50.6
1889 Female, age 72, unknown 49.5
1851 Male, age 51, unknown 49.4
2665 Male, age 74, both hemispheres 49.0
2583 Male, age 75, right hemisphere 48.5
1916 Female, age 42, unknown 48.4
2699 Male, age 18, unknown 48.3
1941 Male, age 53, unknown 47.8
2590 Female, age 75, unknown 46.2
Superior colliculus
nTPM: 48.7
1913 Female, age 42, unknown 51.5
1895 Male, age 76, right hemisphere 50.2
1995 Male, age 72, unknown 50.1
2668 Female, age 75, unknown 49.0
2587 Male, age 74, left hemisphere 48.7
1839 Male, age 51, unknown 48.6
2087 Female, age 72, unknown 48.4
2261 Male, age 18, unknown 47.5
1796 Male, age 53, unknown 47.2
2664 Male, age 75, both hemispheres 46.1
Ventral tegmental area
nTPM: 48.8
2021 Male, age 53, unknown 50.3
1942 Male, age 51, unknown 49.4
2223 Female, age 72, unknown 49.1
2410 Female, age 72, unknown 48.8
1915 Female, age 42, unknown 48.2
2218 Male, age 76, both hemispheres 47.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.4
Samples: 139

Max nTPM: 97.2
Min nTPM: 26.3
Std nTPM: 9.4
Median nTPM: 40.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 97.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 69.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 68.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 67.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 60.7
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 57.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 56.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 56.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 56.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 55.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 55.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.4
FF:10158-103A5 76 years, female 28.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.6
Pig sample Sample description nTPM
Midbrain
nTPM: 62.6
Samples: 4

Max nTPM: 97.8
Min nTPM: 45.6
Sample A Female 97.8
Sample B Female 61.2
Sample C Male 45.6
Sample D Male 45.6
Periaqueductal gray
nTPM: 52.9
Samples: 3

Max nTPM: 55.0
Min nTPM: 51.6
Sample B Female 51.6
Sample C Male 55.0
Sample D Male 52.0
Substantia nigra
nTPM: 65.6
Samples: 4

Max nTPM: 73.1
Min nTPM: 61.1
Sample A Female 73.1
Sample B Female 63.9
Sample C Male 61.1
Sample D Male 64.2
Superior colliculi
nTPM: 53.8
Samples: 4

Max nTPM: 60.8
Min nTPM: 48.6
Sample A Female 60.8
Sample B Female 52.8
Sample C Male 48.6
Sample D Male 52.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.8
Samples: 4

Max nTPM: 63.7
Min nTPM: 58.9
Sample A Male 63.7
Sample B Male 59.3
Sample C Female 61.4
Sample D Female 58.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
2491 Antisense, RP_040507_01_C08, Mouse strain C57BL/6J (56 days, male) 0.4
2492 Antisense, RP_040507_01_C08, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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