BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:6.3 nTPM
HPA:6.3 nTPM
GTEx:17.6 nTPM
FANTOM5:1.4 Scaled Tags Per Million
Pig:3.0 nTPM
Mouse:0.5 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.3
1854 Male, age 80, left hemisphere 5.8
1857 Female, age 85, left hemisphere 5.6
1781 Male, age 74, unknown 5.5
2289 Male, age 61, right hemisphere 3.1
2290 Female, age 72, unknown 2.3
2846 Female, age 79, unknown 1.9
2288 Male, age 75, left hemisphere 1.6
2481 Female, age 94, left hemisphere 1.0
Claustrum
nTPM: 1.5
2196 Female, age 79, unknown 3.8
2392 Female, age 94, both hemispheres 2.2
2292 Female, age 85, both hemispheres 1.6
2645 Female, age 72, unknown 1.6
2491 Male, age 75, both hemispheres 1.4
2568 Male, age 61, both hemispheres 1.4
2198 Male, age 80, both hemispheres 0.6
2284 Female, age 91, both hemispheres 0.6
1956 Male, age 74, unknown 0.5
Globus pallidus, externus
nTPM: 1.3
2567 Female, age 72, unknown 2.0
2646 Male, age 61, right hemisphere 1.6
1996 Male, age 80, right hemisphere 1.1
2772 Female, age 79, unknown 1.1
2395 Male, age 75, both hemispheres 0.9
Globus pallidus, internus
nTPM: 1.3
2111 Female, age 85, right hemisphere 2.1
2483 Female, age 94, right hemisphere 1.6
2566 Female, age 72, unknown 1.6
2287 Male, age 75, right hemisphere 1.5
2778 Female, age 91, both hemispheres 1.2
1818 Male, age 74, unknown 0.7
2037 Male, age 80, right hemisphere 0.7
Nucleus accumbens
nTPM: 6.3
1856 Female, age 91, right hemisphere 11.2
1783 Male, age 74, unknown 9.7
2824 Male, age 61, right hemisphere 8.5
1806 Female, age 85, left hemisphere 7.3
2698 Female, age 72, unknown 6.9
2391 Female, age 94, left hemisphere 2.4
2732 Male, age 80, right hemisphere 2.4
2286 Male, age 75, left hemisphere 2.2
Nucleus basalis of Meynert
nTPM: 1.2
2484 Female, age 94, left hemisphere 1.2
2569 Male, age 61, both hemispheres 1.2
2821 Male, age 75, both hemispheres 1.2
2393 Male, age 80, right hemisphere 1.0
Nucleus of the diagonal band
nTPM: 1.4
1812 Female, age 91, both hemispheres 2.0
2029 Male, age 61, right hemisphere 1.7
2195 Female, age 85, both hemispheres 1.7
2775 Male, age 80, right hemisphere 1.4
1979 Male, age 74, unknown 0.3
Olfactory tubercle
nTPM: 1.6
1846 Male, age 80, right hemisphere 1.9
2487 Female, age 94, left hemisphere 1.6
2856 Male, age 75, right hemisphere 1.5
1998 Female, age 91, both hemispheres 1.2
Putamen
nTPM: 2.6
1937 Female, age 91, right hemisphere 6.6
1838 Male, age 80, right hemisphere 6.1
1829 Male, age 74, unknown 1.7
2482 Female, age 94, left hemisphere 1.5
2489 Female, age 72, unknown 1.1
2647 Male, age 75, left hemisphere 0.8
2466 Female, age 79, unknown 0.7
Septal nuclei
nTPM: 1.6
1960 Male, age 74, unknown 3.4
2009 Female, age 91, both hemispheres 1.9
2394 Male, age 61, left hemisphere 1.6
2031 Female, age 72, unknown 1.5
2199 Male, age 80, right hemisphere 1.3
2059 Female, age 85, both hemispheres 0.8
2629 Female, age 94, right hemisphere 0.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 17.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 5.6
Samples: 246

Max nTPM: 26.7
Min nTPM: 0.0
Std nTPM: 4.3
Median nTPM: 4.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 26.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 23.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 23.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 19.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 19.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 16.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 16.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 15.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 15.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 14.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 14.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 17.6
Samples: 246

Max nTPM: 51.6
Min nTPM: 0.2
Std nTPM: 10.4
Median nTPM: 16.7
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 51.6
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 48.7
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 47.3
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 45.6
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 44.8
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 41.7
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 41.5
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 40.7
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 37.7
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 36.9
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 36.1
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Brain - Putamen (basal ganglia)
Average nTPM: 4.3
Samples: 205

Max nTPM: 28.4
Min nTPM: 0.2
Std nTPM: 4.3
Median nTPM: 3.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 28.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 22.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 21.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 20.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 19.6
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 19.2
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 18.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 14.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 14.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 14.3
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 13.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.6
FF:10164-103B2 76 years, female 0.6
Globus pallidus
Scaled Tags Per Million: 0.5
FF:10161-103A8 76 years, female 1.0
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.9
FF:10037-101F1 23-56 years, mixed 0.9
Putamen
Scaled Tags Per Million: 1.4
FF:10176-103C5 60 years, female 1.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.0
Pig sample Sample description nTPM
Caudate
nTPM: 3.0
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.1
Sample A Female 2.1
Sample B Female 3.4
Sample C Male 3.7
Sample D Male 2.8
Putamen
nTPM: 2.7
Samples: 4

Max nTPM: 3.9
Min nTPM: 1.8
Sample A Female 2.2
Sample B Female 3.9
Sample C Male 1.8
Sample D Male 2.7
Septum
nTPM: 1.1
Samples: 4

Max nTPM: 2.6
Min nTPM: 0.0
Sample A Female 1.5
Sample B Female 2.6
Sample C Male 0.2
Sample D Male 0.0
Ventral pallidum
nTPM: 2.2
Samples: 4

Max nTPM: 3.4
Min nTPM: 0.9
Sample A Female 1.4
Sample B Female 3.4
Sample C Male 0.9
Sample D Male 3.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.5
Sample D Female 0.3
Septum
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Male 0.4
Sample B Male 0.1
Sample C Female 0.2
Sample D Female 0.3
Ventral forebrain
nTPM: 0.5
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.4
Sample A Male 0.5
Sample B Male 0.4
Sample C Female 0.5
Sample D Female 0.6

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