BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:18.0 nTPM
HPA:18.0 nTPM
GTEx:24.1 nTPM
FANTOM5:37.0 Scaled Tags Per Million
Pig:13.0 nTPM
Mouse:41.3 nTPM
Allen mouse:3.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA001586
Glial cells Not detected
Neuronal cells Low


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 18.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 17.4
2290 Female, age 72, unknown 19.5
1781 Male, age 74, unknown 19.3
1857 Female, age 85, left hemisphere 19.3
2846 Female, age 79, unknown 17.8
2289 Male, age 61, right hemisphere 17.7
1854 Male, age 80, left hemisphere 17.4
2288 Male, age 75, left hemisphere 14.8
2481 Female, age 94, left hemisphere 13.3
Claustrum
nTPM: 16.1
2645 Female, age 72, unknown 18.2
2568 Male, age 61, both hemispheres 17.2
2284 Female, age 91, both hemispheres 16.6
2198 Male, age 80, both hemispheres 16.3
2292 Female, age 85, both hemispheres 15.9
2196 Female, age 79, unknown 15.6
2491 Male, age 75, both hemispheres 15.6
2392 Female, age 94, both hemispheres 15.0
1956 Male, age 74, unknown 14.8
Globus pallidus, externus
nTPM: 14.3
2646 Male, age 61, right hemisphere 16.6
2567 Female, age 72, unknown 16.3
2395 Male, age 75, both hemispheres 13.7
2772 Female, age 79, unknown 12.7
1996 Male, age 80, right hemisphere 12.4
Globus pallidus, internus
nTPM: 13.5
2566 Female, age 72, unknown 14.6
2111 Female, age 85, right hemisphere 14.5
2778 Female, age 91, both hemispheres 13.8
2483 Female, age 94, right hemisphere 13.7
2287 Male, age 75, right hemisphere 13.1
2037 Male, age 80, right hemisphere 12.7
1818 Male, age 74, unknown 12.4
Nucleus accumbens
nTPM: 16.6
1783 Male, age 74, unknown 19.8
1806 Female, age 85, left hemisphere 18.7
2824 Male, age 61, right hemisphere 17.5
1856 Female, age 91, right hemisphere 17.4
2698 Female, age 72, unknown 15.4
2732 Male, age 80, right hemisphere 15.2
2286 Male, age 75, left hemisphere 15.0
2391 Female, age 94, left hemisphere 14.1
Nucleus basalis of Meynert
nTPM: 16.1
2393 Male, age 80, right hemisphere 17.3
2569 Male, age 61, both hemispheres 16.4
2484 Female, age 94, left hemisphere 16.2
2821 Male, age 75, both hemispheres 14.5
Nucleus of the diagonal band
nTPM: 15.7
2775 Male, age 80, right hemisphere 16.8
2195 Female, age 85, both hemispheres 16.1
1979 Male, age 74, unknown 16.0
2029 Male, age 61, right hemisphere 15.5
1812 Female, age 91, both hemispheres 14.1
Olfactory tubercle
nTPM: 15.2
2487 Female, age 94, left hemisphere 16.0
1998 Female, age 91, both hemispheres 15.6
1846 Male, age 80, right hemisphere 15.1
2856 Male, age 75, right hemisphere 14.3
Putamen
nTPM: 18.0
2466 Female, age 79, unknown 21.1
2489 Female, age 72, unknown 21.1
1829 Male, age 74, unknown 18.3
1838 Male, age 80, right hemisphere 17.7
2647 Male, age 75, left hemisphere 17.7
1937 Female, age 91, right hemisphere 16.8
2482 Female, age 94, left hemisphere 13.1
Septal nuclei
nTPM: 15.4
1960 Male, age 74, unknown 17.2
2059 Female, age 85, both hemispheres 16.6
2031 Female, age 72, unknown 15.6
2394 Male, age 61, left hemisphere 15.0
2009 Female, age 91, both hemispheres 14.8
2199 Male, age 80, right hemisphere 14.3
2629 Female, age 94, right hemisphere 14.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.2
Samples: 246

Max nTPM: 54.6
Min nTPM: 10.9
Std nTPM: 7.6
Median nTPM: 20.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 54.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 48.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 47.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 45.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 43.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 41.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 41.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 41.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 40.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 40.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 39.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.1
Samples: 246

Max nTPM: 58.3
Min nTPM: 7.2
Std nTPM: 8.1
Median nTPM: 22.9
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 58.3
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 55.1
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 51.0
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 45.4
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 43.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 43.7
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 43.4
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 43.0
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 41.7
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 40.5
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 39.4
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Brain - Putamen (basal ganglia)
Average nTPM: 22.1
Samples: 205

Max nTPM: 60.6
Min nTPM: 7.6
Std nTPM: 7.9
Median nTPM: 20.0
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 60.6
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 54.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 46.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 45.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 44.3
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 43.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 40.4
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 39.1
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 37.7
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 37.5
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 36.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 37.0
FF:10164-103B2 76 years, female 37.0
Globus pallidus
Scaled Tags Per Million: 19.4
FF:10161-103A8 76 years, female 27.1
FF:10175-103C4 60 years, female 11.8
Nucleus accumbens
Scaled Tags Per Million: 21.0
FF:10037-101F1 23-56 years, mixed 21.0
Putamen
Scaled Tags Per Million: 29.7
FF:10176-103C5 60 years, female 29.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.0
Pig sample Sample description nTPM
Caudate
nTPM: 11.8
Samples: 4

Max nTPM: 14.0
Min nTPM: 9.0
Sample A Female 11.1
Sample B Female 14.0
Sample C Male 13.1
Sample D Male 9.0
Putamen
nTPM: 13.0
Samples: 4

Max nTPM: 13.9
Min nTPM: 11.5
Sample A Female 12.8
Sample B Female 11.5
Sample C Male 13.7
Sample D Male 13.9
Septum
nTPM: 12.8
Samples: 4

Max nTPM: 14.5
Min nTPM: 11.3
Sample A Female 14.5
Sample B Female 13.6
Sample C Male 11.3
Sample D Male 11.9
Ventral pallidum
nTPM: 11.9
Samples: 4

Max nTPM: 13.6
Min nTPM: 10.2
Sample A Female 10.8
Sample B Female 13.6
Sample C Male 12.8
Sample D Male 10.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 41.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 41.3
Samples: 4

Max nTPM: 45.4
Min nTPM: 38.8
Sample A Male 40.5
Sample B Male 45.4
Sample C Female 40.5
Sample D Female 38.8
Septum
nTPM: 41.4
Samples: 4

Max nTPM: 44.1
Min nTPM: 39.0
Sample A Male 41.3
Sample B Male 44.1
Sample C Female 41.0
Sample D Female 39.0
Ventral forebrain
nTPM: 40.4
Samples: 4

Max nTPM: 42.2
Min nTPM: 37.0
Sample A Male 37.0
Sample B Male 41.0
Sample C Female 41.5
Sample D Female 42.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.5
68269706 Antisense, RP_041129_02_A12, Mouse strain C57BL/6J (56 days, male) 3.5
Pallidum
Expression energy: 3.9
68269706 Antisense, RP_041129_02_A12, Mouse strain C57BL/6J (56 days, male) 3.9

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