BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:4.4 nTPM
HPA:4.4 nTPM
GTEx:3.3 nTPM
FANTOM5:25.9 Scaled Tags Per Million
Pig:17.4 nTPM
Mouse:5.7 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA056606
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.4
2288 Male, age 75, left hemisphere 4.3
2481 Female, age 94, left hemisphere 4.0
2846 Female, age 79, unknown 3.7
1857 Female, age 85, left hemisphere 3.6
1854 Male, age 80, left hemisphere 3.2
2290 Female, age 72, unknown 3.2
1781 Male, age 74, unknown 3.1
2289 Male, age 61, right hemisphere 2.0
Claustrum
nTPM: 2.5
1956 Male, age 74, unknown 4.0
2196 Female, age 79, unknown 3.1
2392 Female, age 94, both hemispheres 3.1
2198 Male, age 80, both hemispheres 2.5
2292 Female, age 85, both hemispheres 2.5
2568 Male, age 61, both hemispheres 2.3
2284 Female, age 91, both hemispheres 1.8
2491 Male, age 75, both hemispheres 1.8
2645 Female, age 72, unknown 1.4
Globus pallidus, externus
nTPM: 3.1
1996 Male, age 80, right hemisphere 4.2
2772 Female, age 79, unknown 3.4
2395 Male, age 75, both hemispheres 3.3
2567 Female, age 72, unknown 2.5
2646 Male, age 61, right hemisphere 2.2
Globus pallidus, internus
nTPM: 4.4
2287 Male, age 75, right hemisphere 6.4
2778 Female, age 91, both hemispheres 5.3
2111 Female, age 85, right hemisphere 5.0
1818 Male, age 74, unknown 3.8
2037 Male, age 80, right hemisphere 3.8
2483 Female, age 94, right hemisphere 3.2
2566 Female, age 72, unknown 3.2
Nucleus accumbens
nTPM: 3.6
2391 Female, age 94, left hemisphere 4.6
2286 Male, age 75, left hemisphere 4.5
2698 Female, age 72, unknown 4.3
1783 Male, age 74, unknown 3.7
2824 Male, age 61, right hemisphere 3.6
1806 Female, age 85, left hemisphere 3.5
1856 Female, age 91, right hemisphere 2.7
2732 Male, age 80, right hemisphere 2.0
Nucleus basalis of Meynert
nTPM: 2.3
2393 Male, age 80, right hemisphere 2.7
2821 Male, age 75, both hemispheres 2.5
2569 Male, age 61, both hemispheres 2.0
2484 Female, age 94, left hemisphere 1.9
Nucleus of the diagonal band
nTPM: 2.6
2029 Male, age 61, right hemisphere 2.8
2195 Female, age 85, both hemispheres 2.7
1979 Male, age 74, unknown 2.6
1812 Female, age 91, both hemispheres 2.5
2775 Male, age 80, right hemisphere 2.2
Olfactory tubercle
nTPM: 2.7
1846 Male, age 80, right hemisphere 3.3
2856 Male, age 75, right hemisphere 3.0
2487 Female, age 94, left hemisphere 2.3
1998 Female, age 91, both hemispheres 2.1
Putamen
nTPM: 2.9
2482 Female, age 94, left hemisphere 3.8
1829 Male, age 74, unknown 3.3
1937 Female, age 91, right hemisphere 3.0
1838 Male, age 80, right hemisphere 2.8
2466 Female, age 79, unknown 2.7
2647 Male, age 75, left hemisphere 2.3
2489 Female, age 72, unknown 2.1
Septal nuclei
nTPM: 2.6
2629 Female, age 94, right hemisphere 3.7
2031 Female, age 72, unknown 3.6
2199 Male, age 80, right hemisphere 2.5
2394 Male, age 61, left hemisphere 2.4
2009 Female, age 91, both hemispheres 2.3
1960 Male, age 74, unknown 2.1
2059 Female, age 85, both hemispheres 1.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.3
Samples: 246

Max nTPM: 7.5
Min nTPM: 1.5
Std nTPM: 0.7
Median nTPM: 3.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 7.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 6.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 5.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 5.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 5.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 4.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 4.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 4.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 4.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 4.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 4.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.3
Samples: 246

Max nTPM: 6.6
Min nTPM: 1.7
Std nTPM: 0.8
Median nTPM: 3.3
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 6.6
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 6.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 5.7
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 5.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 5.4
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 5.2
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 5.0
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 4.9
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 4.8
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 4.8
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 4.7
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Brain - Putamen (basal ganglia)
Average nTPM: 3.2
Samples: 205

Max nTPM: 6.1
Min nTPM: 1.6
Std nTPM: 0.7
Median nTPM: 3.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 6.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 5.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 4.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 4.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 4.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 4.7
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 4.5
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 4.5
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 4.5
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 4.5
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 4.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 17.4
FF:10164-103B2 76 years, female 17.4
Globus pallidus
Scaled Tags Per Million: 25.9
FF:10161-103A8 76 years, female 28.1
FF:10175-103C4 60 years, female 23.6
Nucleus accumbens
Scaled Tags Per Million: 21.0
FF:10037-101F1 23-56 years, mixed 21.0
Putamen
Scaled Tags Per Million: 22.3
FF:10176-103C5 60 years, female 22.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.4
Pig sample Sample description nTPM
Caudate
nTPM: 13.4
Samples: 4

Max nTPM: 15.7
Min nTPM: 11.8
Sample A Female 12.8
Sample B Female 11.8
Sample C Male 15.7
Sample D Male 13.1
Putamen
nTPM: 17.4
Samples: 4

Max nTPM: 21.1
Min nTPM: 13.9
Sample A Female 17.2
Sample B Female 13.9
Sample C Male 21.1
Sample D Male 17.3
Septum
nTPM: 13.8
Samples: 4

Max nTPM: 15.4
Min nTPM: 12.6
Sample A Female 15.4
Sample B Female 12.6
Sample C Male 13.3
Sample D Male 13.9
Ventral pallidum
nTPM: 15.2
Samples: 4

Max nTPM: 16.1
Min nTPM: 13.8
Sample A Female 13.8
Sample B Female 15.0
Sample C Male 15.8
Sample D Male 16.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.7
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.7
Sample A Male 5.9
Sample B Male 6.1
Sample C Female 4.7
Sample D Female 6.0
Septum
nTPM: 5.0
Samples: 4

Max nTPM: 5.3
Min nTPM: 4.8
Sample A Male 5.0
Sample B Male 5.0
Sample C Female 4.8
Sample D Female 5.3
Ventral forebrain
nTPM: 4.6
Samples: 4

Max nTPM: 5.1
Min nTPM: 3.9
Sample A Male 5.1
Sample B Male 4.9
Sample C Female 3.9
Sample D Female 4.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69524566 Antisense, RP_050419_04_F02, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69524566 Antisense, RP_050419_04_F02, Mouse strain C57BL/6J (56 days, male) 0.0

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