MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:35.8 nTPM
HPA:35.8 nTPM
GTEx:79.6 nTPM
FANTOM5:43.2 Scaled Tags Per Million
Pig:16.4 nTPM
Mouse:55.4 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.2
2411 Female, age 72, unknown 35.3
2666 Male, age 74, left hemisphere 34.9
1827 Male, age 72, unknown 34.2
2019 Male, age 18, unknown 32.5
1833 Male, age 53, unknown 31.7
1870 Female, age 42, unknown 31.6
2828 Female, age 72, unknown 31.4
1830 Male, age 51, unknown 31.0
2219 Male, age 76, both hemispheres 31.0
2586 Male, age 75, left hemisphere 28.8
Dorsal raphe nucleus
nTPM: 34.1
2298 Female, age 72, unknown 36.2
2047 Male, age 72, unknown 35.8
1828 Male, age 53, unknown 34.3
2750 Male, age 76, both hemispheres 33.3
2016 Female, age 72, unknown 31.2
Inferior colliculus
nTPM: 31.3
2097 Female, age 72, unknown 33.3
1848 Female, age 42, unknown 31.6
1890 Male, age 53, unknown 30.8
2849 Male, age 72, unknown 29.5
Median raphe nucleus
nTPM: 33.6
2220 Male, age 76, midline 33.6
Pedunculopontine tegmental nucleus
nTPM: 33.6
1921 Female, age 85, both hemispheres 34.4
2334 Male, age 80, both hemispheres 34.3
2338 Male, age 61, both hemispheres 32.0
Periaquaductal grey, anterior
nTPM: 33.3
1947 Male, age 18, unknown 36.5
1795 Male, age 51, unknown 32.0
2502 Female, age 75, unknown 31.2
Periaquaductal grey, dorsal
nTPM: 30.9
1840 Male, age 53, unknown 32.0
2850 Male, age 76, both hemispheres 31.3
2464 Female, age 72, unknown 30.4
1831 Male, age 72, unknown 29.8
Periaquaductal grey, lateral
nTPM: 29.8
2053 Male, age 18, unknown 30.7
2272 Male, age 74, both hemispheres 30.3
2140 Male, age 76, both hemispheres 28.5
Pretectal area
nTPM: 31.8
1816 Male, age 51, unknown 33.7
1944 Female, age 72, unknown 33.2
2224 Female, age 72, unknown 32.6
1817 Female, age 42, unknown 32.4
2007 Male, age 72, unknown 32.4
2667 Female, age 75, unknown 31.9
1815 Male, age 53, unknown 31.7
2825 Male, age 18, unknown 31.2
2316 Male, age 76, right hemisphere 30.8
2273 Male, age 74, both hemispheres 30.4
2407 Male, age 75, both hemispheres 30.1
Red nucleus
nTPM: 31.9
1821 Female, age 72, unknown 34.8
2725 Female, age 75, unknown 34.8
1954 Female, age 42, unknown 33.1
1904 Male, age 53, unknown 32.3
2503 Female, age 72, unknown 32.2
2823 Male, age 76, right hemisphere 31.7
1865 Male, age 51, unknown 31.2
2588 Male, age 74, left hemisphere 30.9
2227 Male, age 72, unknown 30.6
2769 Male, age 72, unknown 30.6
2584 Male, age 75, left hemisphere 30.5
2785 Male, age 18, unknown 30.3
Substantia nigra
nTPM: 35.8
2409 Female, age 72, unknown 42.4
2241 Male, age 72, unknown 40.8
1916 Female, age 42, unknown 38.7
1851 Male, age 51, unknown 37.6
1941 Male, age 53, unknown 35.9
1889 Female, age 72, unknown 35.0
2699 Male, age 18, unknown 33.1
2590 Female, age 75, unknown 32.5
2665 Male, age 74, both hemispheres 31.8
2583 Male, age 75, right hemisphere 30.5
Superior colliculus
nTPM: 31.0
1895 Male, age 76, right hemisphere 32.7
2668 Female, age 75, unknown 32.5
2087 Female, age 72, unknown 32.1
1796 Male, age 53, unknown 31.5
2587 Male, age 74, left hemisphere 31.5
2261 Male, age 18, unknown 31.0
1839 Male, age 51, unknown 30.3
1913 Female, age 42, unknown 30.2
1995 Male, age 72, unknown 29.4
2664 Male, age 75, both hemispheres 29.2
Ventral tegmental area
nTPM: 34.3
2410 Female, age 72, unknown 36.7
1915 Female, age 42, unknown 35.0
1942 Male, age 51, unknown 34.4
2218 Male, age 76, both hemispheres 34.1
2223 Female, age 72, unknown 33.3
2021 Male, age 53, unknown 32.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.6
Samples: 139

Max nTPM: 146.3
Min nTPM: 39.8
Std nTPM: 19.4
Median nTPM: 77.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 146.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 136.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 126.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 125.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 118.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 116.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 115.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 114.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 110.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 110.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 110.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.2
FF:10158-103A5 76 years, female 43.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.4
Pig sample Sample description nTPM
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 17.7
Min nTPM: 14.9
Sample A Female 17.7
Sample B Female 17.0
Sample C Male 14.9
Sample D Male 15.4
Periaqueductal gray
nTPM: 16.3
Samples: 3

Max nTPM: 16.9
Min nTPM: 15.5
Sample B Female 16.9
Sample C Male 16.4
Sample D Male 15.5
Substantia nigra
nTPM: 16.4
Samples: 4

Max nTPM: 18.0
Min nTPM: 14.7
Sample A Female 18.0
Sample B Female 14.7
Sample C Male 16.5
Sample D Male 16.2
Superior colliculi
nTPM: 14.8
Samples: 4

Max nTPM: 16.3
Min nTPM: 12.2
Sample A Female 14.7
Sample B Female 12.2
Sample C Male 16.3
Sample D Male 15.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.5
Samples: 4

Max nTPM: 60.1
Min nTPM: 47.3
Sample A Male 60.1
Sample B Male 58.6
Sample C Female 47.3
Sample D Female 55.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
77620441 Antisense, RP_070129_03_C08, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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