MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:183.1 nTPM
HPA:183.1 nTPM
GTEx:274.5 nTPM
FANTOM5:867.5 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:0.0 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 183.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 95.6
1870 Female, age 42, unknown 115.5
2586 Male, age 75, left hemisphere 111.4
2828 Female, age 72, unknown 108.4
2666 Male, age 74, left hemisphere 104.9
1830 Male, age 51, unknown 93.3
1827 Male, age 72, unknown 90.4
1833 Male, age 53, unknown 90.0
2411 Female, age 72, unknown 83.7
2019 Male, age 18, unknown 83.5
2219 Male, age 76, both hemispheres 74.8
Dorsal raphe nucleus
nTPM: 119.2
2047 Male, age 72, unknown 136.0
2016 Female, age 72, unknown 133.8
1828 Male, age 53, unknown 122.9
2298 Female, age 72, unknown 110.4
2750 Male, age 76, both hemispheres 93.0
Inferior colliculus
nTPM: 89.8
2097 Female, age 72, unknown 100.2
1848 Female, age 42, unknown 88.2
2849 Male, age 72, unknown 88.1
1890 Male, age 53, unknown 82.8
Median raphe nucleus
nTPM: 100.7
2220 Male, age 76, midline 100.7
Pedunculopontine tegmental nucleus
nTPM: 97.3
2338 Male, age 61, both hemispheres 115.1
2334 Male, age 80, both hemispheres 96.7
1921 Female, age 85, both hemispheres 80.0
Periaquaductal grey, anterior
nTPM: 122.3
1795 Male, age 51, unknown 180.8
2502 Female, age 75, unknown 93.8
1947 Male, age 18, unknown 92.4
Periaquaductal grey, dorsal
nTPM: 128.2
1831 Male, age 72, unknown 165.7
2850 Male, age 76, both hemispheres 135.9
1840 Male, age 53, unknown 111.5
2464 Female, age 72, unknown 99.7
Periaquaductal grey, lateral
nTPM: 183.1
2272 Male, age 74, both hemispheres 209.2
2053 Male, age 18, unknown 208.4
2140 Male, age 76, both hemispheres 131.9
Pretectal area
nTPM: 108.6
2273 Male, age 74, both hemispheres 216.9
2224 Female, age 72, unknown 134.3
2407 Male, age 75, both hemispheres 117.7
2825 Male, age 18, unknown 117.5
2316 Male, age 76, right hemisphere 107.1
1815 Male, age 53, unknown 92.1
2667 Female, age 75, unknown 90.3
1944 Female, age 72, unknown 87.5
1817 Female, age 42, unknown 82.8
1816 Male, age 51, unknown 74.9
2007 Male, age 72, unknown 73.9
Red nucleus
nTPM: 98.7
2725 Female, age 75, unknown 172.4
2785 Male, age 18, unknown 108.3
2823 Male, age 76, right hemisphere 101.8
1821 Female, age 72, unknown 101.3
1865 Male, age 51, unknown 96.6
2503 Female, age 72, unknown 93.1
2769 Male, age 72, unknown 92.7
2227 Male, age 72, unknown 91.7
2584 Male, age 75, left hemisphere 85.6
1954 Female, age 42, unknown 82.7
1904 Male, age 53, unknown 79.7
2588 Male, age 74, left hemisphere 78.2
Substantia nigra
nTPM: 110.0
2409 Female, age 72, unknown 150.7
1851 Male, age 51, unknown 145.2
1941 Male, age 53, unknown 124.9
2590 Female, age 75, unknown 120.4
2699 Male, age 18, unknown 115.8
1916 Female, age 42, unknown 95.6
2241 Male, age 72, unknown 92.4
1889 Female, age 72, unknown 88.9
2583 Male, age 75, right hemisphere 88.4
2665 Male, age 74, both hemispheres 77.8
Superior colliculus
nTPM: 119.2
1913 Female, age 42, unknown 182.6
1995 Male, age 72, unknown 168.1
2587 Male, age 74, left hemisphere 155.6
1796 Male, age 53, unknown 126.7
2087 Female, age 72, unknown 112.5
2664 Male, age 75, both hemispheres 102.5
1839 Male, age 51, unknown 91.6
2261 Male, age 18, unknown 90.3
1895 Male, age 76, right hemisphere 81.5
2668 Female, age 75, unknown 80.4
Ventral tegmental area
nTPM: 129.4
2021 Male, age 53, unknown 162.3
1915 Female, age 42, unknown 162.0
2223 Female, age 72, unknown 143.0
1942 Male, age 51, unknown 111.9
2218 Male, age 76, both hemispheres 100.3
2410 Female, age 72, unknown 96.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 274.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 274.5
Samples: 139

Max nTPM: 3839.3
Min nTPM: 5.7
Std nTPM: 531.5
Median nTPM: 93.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 3839.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 3368.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 2287.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1926.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1444.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1202.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 1140.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1076.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 991.3
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 982.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 842.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 867.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 867.5
FF:10158-103A5 76 years, female 867.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.0
Pig sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.0
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Substantia nigra
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.7
Samples: 4

Max nTPM: 25.5
Min nTPM: 24.1
Sample A Male 24.3
Sample B Male 25.5
Sample C Female 25.0
Sample D Female 24.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69549296 Antisense, RP_050126_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2
75860996 Antisense, RP_060601_03_A05, Mouse strain C57BL/6J (56 days, male) 0.2
72081514 Antisense, RP_051017_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1
75043155 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.1
71574552 Antisense, RP_050915_03_H10, Mouse strain C57BL/6J (56 days, male) 0.0
70228304 Antisense, RP_050524_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0
75694278 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.2
69549296 Antisense, RP_050126_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2
75860996 Antisense, RP_060601_03_A05, Mouse strain C57BL/6J (56 days, male) 0.2
72081514 Antisense, RP_051017_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1
75043155 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.1
71574552 Antisense, RP_050915_03_H10, Mouse strain C57BL/6J (56 days, male) 0.0
70228304 Antisense, RP_050524_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0
75694278 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.2
69549296 Antisense, RP_050126_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2
75860996 Antisense, RP_060601_03_A05, Mouse strain C57BL/6J (56 days, male) 0.2
72081514 Antisense, RP_051017_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1
75043155 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.1
71574552 Antisense, RP_050915_03_H10, Mouse strain C57BL/6J (56 days, male) 0.0
70228304 Antisense, RP_050524_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0
75694278 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.2
69549296 Antisense, RP_050126_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2
75860996 Antisense, RP_060601_03_A05, Mouse strain C57BL/6J (56 days, male) 0.2
72081514 Antisense, RP_051017_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1
75043155 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.1
71574552 Antisense, RP_050915_03_H10, Mouse strain C57BL/6J (56 days, male) 0.0
70228304 Antisense, RP_050524_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0
75694278 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.2
69549296 Antisense, RP_050126_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2
75860996 Antisense, RP_060601_03_A05, Mouse strain C57BL/6J (56 days, male) 0.2
72081514 Antisense, RP_051017_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1
75043155 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.1
71574552 Antisense, RP_050915_03_H10, Mouse strain C57BL/6J (56 days, male) 0.0
70228304 Antisense, RP_050524_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0
75694278 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.2
69549296 Antisense, RP_050126_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2
75860996 Antisense, RP_060601_03_A05, Mouse strain C57BL/6J (56 days, male) 0.2
72081514 Antisense, RP_051017_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1
75043155 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.1
71574552 Antisense, RP_050915_03_H10, Mouse strain C57BL/6J (56 days, male) 0.0
70228304 Antisense, RP_050524_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0
75694278 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.2
69549296 Antisense, RP_050126_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2
75860996 Antisense, RP_060601_03_A05, Mouse strain C57BL/6J (56 days, male) 0.2
72081514 Antisense, RP_051017_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1
75043155 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.1
71574552 Antisense, RP_050915_03_H10, Mouse strain C57BL/6J (56 days, male) 0.0
70228304 Antisense, RP_050524_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0
75694278 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.2
69549296 Antisense, RP_050126_02_H09, Mouse strain C57BL/6J (56 days, male) 0.2
75860996 Antisense, RP_060601_03_A05, Mouse strain C57BL/6J (56 days, male) 0.2
72081514 Antisense, RP_051017_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1
75043155 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.1
71574552 Antisense, RP_050915_03_H10, Mouse strain C57BL/6J (56 days, male) 0.0
70228304 Antisense, RP_050524_03_C05, Mouse strain C57BL/6J (56 days, male) 0.0
75694278 Antisense, RP_060412_05_B06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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