BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:4.0 nTPM
HPA:4.0 nTPM
GTEx:4.8 nTPM
FANTOM5:2.7 Scaled Tags Per Million
Mouse:1.1 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.6
2290 Female, age 72, unknown 4.6
1854 Male, age 80, left hemisphere 4.0
2846 Female, age 79, unknown 4.0
2288 Male, age 75, left hemisphere 3.8
1857 Female, age 85, left hemisphere 3.5
2289 Male, age 61, right hemisphere 3.5
1781 Male, age 74, unknown 2.9
2481 Female, age 94, left hemisphere 2.9
Claustrum
nTPM: 3.2
2645 Female, age 72, unknown 4.5
2568 Male, age 61, both hemispheres 3.7
2196 Female, age 79, unknown 3.4
2284 Female, age 91, both hemispheres 3.2
2292 Female, age 85, both hemispheres 3.1
1956 Male, age 74, unknown 2.9
2198 Male, age 80, both hemispheres 2.8
2392 Female, age 94, both hemispheres 2.8
2491 Male, age 75, both hemispheres 2.8
Globus pallidus, externus
nTPM: 3.3
2646 Male, age 61, right hemisphere 3.7
2567 Female, age 72, unknown 3.4
1996 Male, age 80, right hemisphere 3.3
2395 Male, age 75, both hemispheres 3.2
2772 Female, age 79, unknown 3.0
Globus pallidus, internus
nTPM: 3.1
2287 Male, age 75, right hemisphere 3.8
1818 Male, age 74, unknown 3.4
2566 Female, age 72, unknown 3.1
2778 Female, age 91, both hemispheres 3.1
2037 Male, age 80, right hemisphere 3.0
2111 Female, age 85, right hemisphere 2.7
2483 Female, age 94, right hemisphere 2.7
Nucleus accumbens
nTPM: 3.4
2286 Male, age 75, left hemisphere 3.9
1806 Female, age 85, left hemisphere 3.8
1856 Female, age 91, right hemisphere 3.7
2698 Female, age 72, unknown 3.5
1783 Male, age 74, unknown 3.4
2824 Male, age 61, right hemisphere 3.3
2732 Male, age 80, right hemisphere 3.1
2391 Female, age 94, left hemisphere 3.0
Nucleus basalis of Meynert
nTPM: 4.0
2393 Male, age 80, right hemisphere 4.0
2484 Female, age 94, left hemisphere 4.0
2569 Male, age 61, both hemispheres 3.9
2821 Male, age 75, both hemispheres 3.9
Nucleus of the diagonal band
nTPM: 2.8
2029 Male, age 61, right hemisphere 3.4
1979 Male, age 74, unknown 2.7
2195 Female, age 85, both hemispheres 2.6
2775 Male, age 80, right hemisphere 2.6
1812 Female, age 91, both hemispheres 2.5
Olfactory tubercle
nTPM: 2.9
2487 Female, age 94, left hemisphere 3.1
2856 Male, age 75, right hemisphere 3.1
1998 Female, age 91, both hemispheres 2.7
1846 Male, age 80, right hemisphere 2.6
Putamen
nTPM: 4.0
2489 Female, age 72, unknown 4.7
2647 Male, age 75, left hemisphere 4.4
2466 Female, age 79, unknown 4.3
1838 Male, age 80, right hemisphere 4.1
1829 Male, age 74, unknown 3.7
1937 Female, age 91, right hemisphere 3.4
2482 Female, age 94, left hemisphere 3.3
Septal nuclei
nTPM: 2.8
2394 Male, age 61, left hemisphere 3.5
1960 Male, age 74, unknown 3.0
2199 Male, age 80, right hemisphere 3.0
2031 Female, age 72, unknown 2.8
2629 Female, age 94, right hemisphere 2.7
2059 Female, age 85, both hemispheres 2.6
2009 Female, age 91, both hemispheres 2.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.6
Samples: 246

Max nTPM: 30.5
Min nTPM: 0.0
Std nTPM: 3.1
Median nTPM: 2.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 30.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 16.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 14.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 13.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 11.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 11.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 10.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 10.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 9.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 9.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 9.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.9
Samples: 246

Max nTPM: 35.5
Min nTPM: 0.2
Std nTPM: 3.1
Median nTPM: 2.0
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 35.5
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 14.6
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 12.6
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 11.9
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 10.2
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 9.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 9.4
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 9.2
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 9.1
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 8.7
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 8.4
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Brain - Putamen (basal ganglia)
Average nTPM: 4.8
Samples: 205

Max nTPM: 40.6
Min nTPM: 0.3
Std nTPM: 4.4
Median nTPM: 3.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 40.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 26.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 19.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 16.9
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 16.0
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 15.6
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 14.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 14.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 13.1
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 12.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 12.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1.5
FF:10164-103B2 76 years, female 1.5
Globus pallidus
Scaled Tags Per Million: 2.4
FF:10161-103A8 76 years, female 4.1
FF:10175-103C4 60 years, female 0.7
Nucleus accumbens
Scaled Tags Per Million: 2.7
FF:10037-101F1 23-56 years, mixed 2.7
Putamen
Scaled Tags Per Million: 1.4
FF:10176-103C5 60 years, female 1.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.2
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.9
Sample A Male 1.1
Sample B Male 0.9
Sample C Female 1.2
Sample D Female 1.4
Septum
nTPM: 0.7
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.5
Sample A Male 0.8
Sample B Male 0.5
Sample C Female 0.7
Sample D Female 0.6
Ventral forebrain
nTPM: 1.0
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.8
Sample A Male 1.2
Sample B Male 0.9
Sample C Female 0.9
Sample D Female 0.8

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The Human Protein Atlas

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