MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:74.8 nTPM
HPA:74.8 nTPM
GTEx:163.1 nTPM
FANTOM5:333.8 Scaled Tags Per Million
Pig:238.7 nTPM
Mouse:265.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 74.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.0
1827 Male, age 72, unknown 63.0
2411 Female, age 72, unknown 55.7
1870 Female, age 42, unknown 52.6
2828 Female, age 72, unknown 51.0
2219 Male, age 76, both hemispheres 49.2
2666 Male, age 74, left hemisphere 40.1
2019 Male, age 18, unknown 32.4
2586 Male, age 75, left hemisphere 30.0
1830 Male, age 51, unknown 29.0
1833 Male, age 53, unknown 27.1
Dorsal raphe nucleus
nTPM: 56.4
2298 Female, age 72, unknown 82.1
2047 Male, age 72, unknown 69.2
2750 Male, age 76, both hemispheres 61.8
1828 Male, age 53, unknown 37.3
2016 Female, age 72, unknown 31.8
Inferior colliculus
nTPM: 33.3
2097 Female, age 72, unknown 40.9
2849 Male, age 72, unknown 32.6
1890 Male, age 53, unknown 31.4
1848 Female, age 42, unknown 28.2
Median raphe nucleus
nTPM: 74.8
2220 Male, age 76, midline 74.8
Pedunculopontine tegmental nucleus
nTPM: 62.0
2334 Male, age 80, both hemispheres 68.2
1921 Female, age 85, both hemispheres 59.5
2338 Male, age 61, both hemispheres 58.4
Periaquaductal grey, anterior
nTPM: 60.7
1795 Male, age 51, unknown 76.0
1947 Male, age 18, unknown 63.1
2502 Female, age 75, unknown 43.0
Periaquaductal grey, dorsal
nTPM: 44.1
1840 Male, age 53, unknown 57.1
2850 Male, age 76, both hemispheres 48.0
1831 Male, age 72, unknown 37.4
2464 Female, age 72, unknown 34.0
Periaquaductal grey, lateral
nTPM: 42.9
2272 Male, age 74, both hemispheres 46.8
2053 Male, age 18, unknown 44.9
2140 Male, age 76, both hemispheres 37.2
Pretectal area
nTPM: 49.9
2224 Female, age 72, unknown 72.4
1816 Male, age 51, unknown 64.4
1944 Female, age 72, unknown 61.3
2007 Male, age 72, unknown 50.5
2825 Male, age 18, unknown 50.5
2273 Male, age 74, both hemispheres 49.1
2667 Female, age 75, unknown 46.7
1817 Female, age 42, unknown 46.0
1815 Male, age 53, unknown 40.7
2407 Male, age 75, both hemispheres 35.3
2316 Male, age 76, right hemisphere 32.2
Red nucleus
nTPM: 27.7
2725 Female, age 75, unknown 43.1
2584 Male, age 75, left hemisphere 33.4
2785 Male, age 18, unknown 31.5
1821 Female, age 72, unknown 30.7
1954 Female, age 42, unknown 29.0
2823 Male, age 76, right hemisphere 26.1
2503 Female, age 72, unknown 25.9
1904 Male, age 53, unknown 25.8
2227 Male, age 72, unknown 24.9
2769 Male, age 72, unknown 24.8
1865 Male, age 51, unknown 23.0
2588 Male, age 74, left hemisphere 14.4
Substantia nigra
nTPM: 52.8
1916 Female, age 42, unknown 78.3
1851 Male, age 51, unknown 63.0
1941 Male, age 53, unknown 59.9
2241 Male, age 72, unknown 56.8
2665 Male, age 74, both hemispheres 56.3
1889 Female, age 72, unknown 49.7
2590 Female, age 75, unknown 49.7
2409 Female, age 72, unknown 43.7
2699 Male, age 18, unknown 37.6
2583 Male, age 75, right hemisphere 33.3
Superior colliculus
nTPM: 41.1
1796 Male, age 53, unknown 68.8
2261 Male, age 18, unknown 52.3
2587 Male, age 74, left hemisphere 50.1
2087 Female, age 72, unknown 44.9
2668 Female, age 75, unknown 38.9
1895 Male, age 76, right hemisphere 34.3
1839 Male, age 51, unknown 34.0
1913 Female, age 42, unknown 33.6
2664 Male, age 75, both hemispheres 31.4
1995 Male, age 72, unknown 22.5
Ventral tegmental area
nTPM: 57.9
2410 Female, age 72, unknown 63.3
1915 Female, age 42, unknown 62.3
2218 Male, age 76, both hemispheres 61.0
2021 Male, age 53, unknown 60.0
1942 Male, age 51, unknown 50.9
2223 Female, age 72, unknown 50.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 163.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 163.1
Samples: 139

Max nTPM: 322.0
Min nTPM: 60.4
Std nTPM: 57.9
Median nTPM: 154.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 322.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 321.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 306.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 304.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 297.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 296.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 285.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 283.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 275.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 268.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 260.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 333.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 333.8
FF:10158-103A5 76 years, female 333.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 238.7
Pig sample Sample description nTPM
Midbrain
nTPM: 238.8
Samples: 4

Max nTPM: 332.8
Min nTPM: 157.1
Sample A Female 290.0
Sample B Female 157.1
Sample C Male 332.8
Sample D Male 175.1
Periaqueductal gray
nTPM: 153.1
Samples: 3

Max nTPM: 191.3
Min nTPM: 130.6
Sample B Female 130.6
Sample C Male 191.3
Sample D Male 137.4
Substantia nigra
nTPM: 214.1
Samples: 4

Max nTPM: 295.9
Min nTPM: 140.1
Sample A Female 295.9
Sample B Female 174.7
Sample C Male 245.6
Sample D Male 140.1
Superior colliculi
nTPM: 229.0
Samples: 4

Max nTPM: 281.5
Min nTPM: 197.1
Sample A Female 232.0
Sample B Female 205.2
Sample C Male 281.5
Sample D Male 197.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 265.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 265.0
Samples: 4

Max nTPM: 279.6
Min nTPM: 246.9
Sample A Male 279.6
Sample B Male 262.9
Sample C Female 246.9
Sample D Female 270.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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